| Definition | Alcanivorax borkumensis SK2 chromosome, complete genome. |
|---|---|
| Accession | NC_008260 |
| Length | 3,120,143 |
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The map label for this gene is 110833593
Identifier: 110833593
GI number: 110833593
Start: 822308
End: 823213
Strand: Direct
Name: 110833593
Synonym: ABO_0732
Alternate gene names: NA
Gene position: 822308-823213 (Clockwise)
Preceding gene: 110833591
Following gene: 110833594
Centisome position: 26.35
GC content: 48.9
Gene sequence:
>906_bases ATGACAGTGATTCTGGCCTGCCTGCTAATTTATGCCGGCTGTATTCTTTTTATCCGGATGCGTAATCGCGAGCCGTTTGG CTTGAAGCGCCAGTTGTCGGATTTTTCCACCTTTATGGTGCCGTTCAATATCCCCGCCTATTTGCTGTCCAAAGTGCCAA CCACACCGCGTATCGATTTGTCGTATCTGCCGGAGCTGCAACTGATTGAAGATAACTGGGAAACCATCCGTGATGAGGCG GTGGCGCTGTACCAAGGTGGTTTAATTACGGCAAAGGATGACCTGCCCGCTAGCAGCTTCTATAAGGATAACCGTTGGAC CAGCTTCTACTTGAAGGTGTACGACAATAAGCTTCCCTCCGCCTACAATTTAGCGCCTAAAACCATGGCGCTGCTGGAGC AAATCCCGACGCTGAATATCGCCTTGTTCGCGGTGTTGATGCCGGGCAAGAAGCTCAATCGGCACCATGATCCTTTTGCC TACACCTTGCGATACTCCATTGGGTTGAGTACACCCAACGATGAAGGCTGCGGATTGACGGTGGATGAAGAGGATTATAT CTGGCGTGATGGCGACAGTATTATCTTTGATGAAACCTATATTCATTCCGCTTGGAACCGTACCGAGACGCCTCGTATTA TTTTGATGACAGACGTGGACCGGCCCATGAAAATTAAATGGGTGCAGAAGAGCTATTGGTTTTTTGGCTGGTTCTTTAAT CGTTTGTTCATGATCGATAACGTGGATAGCAGCCATACGGGTATTGGCAACAAATTGGGCAAGGGGGTGTTGGCTTACAA AGCGTTCCTTAAGTCCGTAAAAAGAAAGAACAAGCCGTTCTATGTGACAGCCAAATGGATAGTGGTGCTGGCGGTGCTGG GCAGTATCGGTTACCGGTTGGTGTAA
Upstream 100 bases:
>100_bases CTGATTGGCAGGTATTATGCTGATTTTACGGGGTGGTTTTTAAGATCCCGTCCGTCGATTTTTCGGGCAGTAGGTCTGCC CAGAACCCAGGGAAAAGCTG
Downstream 100 bases:
>100_bases GGAGGGGGCGCTGCCTGCACCCGGTGAGGGTCTGATTTAGCTGCAGCATACCCTCCGACTGCAAGCCTCTTTCTCCTTCT CGGCTTGCCAACAAACGTGT
Product: peptide-aspartate beta-dioxygenase
Products: NA
Alternate protein names: Beta-Hydroxylase; Membrane-Bound Beta-Hydroxylase; Asparaginyl Beta-Hydroxylase; Aspartyl-Asparaginyl Beta-Hydroxylase; Aspartyl/Asparaginyl Beta-Hydroxylase Family Protein; Aspartyl/Asparaginyl Beta-Hydroxylase Family; Lipopolysaccharide Biosynthetic; Peptide-Aspartate Beta-Dioxygenase; Lipid A-Myristate Beta-Hydroxylase; Aspartyl/Asparaginyl Beta-Hydroxylase Transmembrane Protein; Beta-Hydroxylase Aspartyl/Asparaginyl Family; Peptide Aspartate B-Dioxygenase; Aspartyl/Asparaginyl-Beta-Hydroxylase; Hydroxylase; Peptide-Aspartate B-Dioxygenase; Aspartate Beta-Hydroxylase; Lipopolysaccharide Biosynthetic Protein; Fe(2+)/Alpha-Ketoglutarate-Dependent Dioxygenase LpxO; Dioxygenase; Aspartyl/Asparaginyl Beta-Hydroxylase Protein
Number of amino acids: Translated: 301; Mature: 300
Protein sequence:
>301_residues MTVILACLLIYAGCILFIRMRNREPFGLKRQLSDFSTFMVPFNIPAYLLSKVPTTPRIDLSYLPELQLIEDNWETIRDEA VALYQGGLITAKDDLPASSFYKDNRWTSFYLKVYDNKLPSAYNLAPKTMALLEQIPTLNIALFAVLMPGKKLNRHHDPFA YTLRYSIGLSTPNDEGCGLTVDEEDYIWRDGDSIIFDETYIHSAWNRTETPRIILMTDVDRPMKIKWVQKSYWFFGWFFN RLFMIDNVDSSHTGIGNKLGKGVLAYKAFLKSVKRKNKPFYVTAKWIVVLAVLGSIGYRLV
Sequences:
>Translated_301_residues MTVILACLLIYAGCILFIRMRNREPFGLKRQLSDFSTFMVPFNIPAYLLSKVPTTPRIDLSYLPELQLIEDNWETIRDEA VALYQGGLITAKDDLPASSFYKDNRWTSFYLKVYDNKLPSAYNLAPKTMALLEQIPTLNIALFAVLMPGKKLNRHHDPFA YTLRYSIGLSTPNDEGCGLTVDEEDYIWRDGDSIIFDETYIHSAWNRTETPRIILMTDVDRPMKIKWVQKSYWFFGWFFN RLFMIDNVDSSHTGIGNKLGKGVLAYKAFLKSVKRKNKPFYVTAKWIVVLAVLGSIGYRLV >Mature_300_residues TVILACLLIYAGCILFIRMRNREPFGLKRQLSDFSTFMVPFNIPAYLLSKVPTTPRIDLSYLPELQLIEDNWETIRDEAV ALYQGGLITAKDDLPASSFYKDNRWTSFYLKVYDNKLPSAYNLAPKTMALLEQIPTLNIALFAVLMPGKKLNRHHDPFAY TLRYSIGLSTPNDEGCGLTVDEEDYIWRDGDSIIFDETYIHSAWNRTETPRIILMTDVDRPMKIKWVQKSYWFFGWFFNR LFMIDNVDSSHTGIGNKLGKGVLAYKAFLKSVKRKNKPFYVTAKWIVVLAVLGSIGYRLV
Specific function: Unknown
COG id: COG3555
COG function: function code O; Aspartyl/asparaginyl beta-hydroxylase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI194328779, Length=189, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI14589866, Length=175, Percent_Identity=29.1428571428571, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI258613943, Length=175, Percent_Identity=29.1428571428571, Blast_Score=75, Evalue=7e-14, Organism=Drosophila melanogaster, GI24654024, Length=178, Percent_Identity=26.4044943820225, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34731; Mature: 34600
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVILACLLIYAGCILFIRMRNREPFGLKRQLSDFSTFMVPFNIPAYLLSKVPTTPRIDL CHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHCCHHEEEEECCCHHHHHHCCCCCCCCCH SYLPELQLIEDNWETIRDEAVALYQGGLITAKDDLPASSFYKDNRWTSFYLKVYDNKLPS HHCCCEEEECCCHHHHHHHHHEEEECCEEEECCCCCCHHHCCCCCCEEEEEEEECCCCCC AYNLAPKTMALLEQIPTLNIALFAVLMPGKKLNRHHDPFAYTLRYSIGLSTPNDEGCGLT CCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCCEEEEEEEEEECCCCCCCCCEEE VDEEDYIWRDGDSIIFDETYIHSAWNRTETPRIILMTDVDRPMKIKWVQKSYWFFGWFFN ECCCCCEEECCCEEEEEHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHH RLFMIDNVDSSHTGIGNKLGKGVLAYKAFLKSVKRKNKPFYVTAKWIVVLAVLGSIGYRL HEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCC V C >Mature Secondary Structure TVILACLLIYAGCILFIRMRNREPFGLKRQLSDFSTFMVPFNIPAYLLSKVPTTPRIDL HHHHHHHHHHHHHHEEEEECCCCCCCHHHHHCCHHEEEEECCCHHHHHHCCCCCCCCCH SYLPELQLIEDNWETIRDEAVALYQGGLITAKDDLPASSFYKDNRWTSFYLKVYDNKLPS HHCCCEEEECCCHHHHHHHHHEEEECCEEEECCCCCCHHHCCCCCCEEEEEEEECCCCCC AYNLAPKTMALLEQIPTLNIALFAVLMPGKKLNRHHDPFAYTLRYSIGLSTPNDEGCGLT CCCCCHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCCEEEEEEEEEECCCCCCCCCEEE VDEEDYIWRDGDSIIFDETYIHSAWNRTETPRIILMTDVDRPMKIKWVQKSYWFFGWFFN ECCCCCEEECCCEEEEEHHHHHHHCCCCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHH RLFMIDNVDSSHTGIGNKLGKGVLAYKAFLKSVKRKNKPFYVTAKWIVVLAVLGSIGYRL HEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCCC V C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA