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The map label for this gene is ybdF [H]

Identifier: 110833505

GI number: 110833505

Start: 713033

End: 713431

Strand: Direct

Name: ybdF [H]

Synonym: ABO_0644

Alternate gene names: 110833505

Gene position: 713033-713431 (Clockwise)

Preceding gene: 110833504

Following gene: 110833506

Centisome position: 22.85

GC content: 54.39

Gene sequence:

>399_bases
GTGATCGACATGGATGTTGATGTGGTACGAGATTATCTCTTGGGTAAGCCTGAAGCATTGGAAGACTTTCCTTTCGGCCC
GGATGTGGCGGTGATGAAAGTGCGCGGCAAAATGTTTGCCACGCTGGGTGAGGAGAGCGGTGAAGGGCGCATGAACCTGA
AGTGCGATCCGGACCAAGCGCTGGCACTTCGAGATATTTTTGCTGCGGTACTGCCTGGCTACCATATGAACAAGAAACAC
TGGAACACCATCAAGCTGGATGGCTCTATTCCTGAAGGAGAAATCCAGCGCATGATCGATCACTCTTTTGCGCTGGTGGT
CGGCGGCTTGCCGAAAAAAGTGCGCGAAGGCATGGCCGTGCGCCATGGCCGTGAGTCACTCTATGGCGGCCAGCACTGA

Upstream 100 bases:

>100_bases
GCACAGGAACGTCATCCGGATATCCGCTTCCGCGAAACCCGGGAAATCTGAGGGCAATTGTTGCCGTAACCTTATTGACG
GCGCGTCTGGATAAAATCGG

Downstream 100 bases:

>100_bases
ACAGGTAGGGAGAAGGCAATGGCGGTGGGTATCGGTGGCGTAATTATTATTTGGTTGGGCCTAACCATGGGCGCGGCGAT
GTTGCGGTGGTTGGGTGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MIDMDVDVVRDYLLGKPEALEDFPFGPDVAVMKVRGKMFATLGEESGEGRMNLKCDPDQALALRDIFAAVLPGYHMNKKH
WNTIKLDGSIPEGEIQRMIDHSFALVVGGLPKKVREGMAVRHGRESLYGGQH

Sequences:

>Translated_132_residues
MIDMDVDVVRDYLLGKPEALEDFPFGPDVAVMKVRGKMFATLGEESGEGRMNLKCDPDQALALRDIFAAVLPGYHMNKKH
WNTIKLDGSIPEGEIQRMIDHSFALVVGGLPKKVREGMAVRHGRESLYGGQH
>Mature_132_residues
MIDMDVDVVRDYLLGKPEALEDFPFGPDVAVMKVRGKMFATLGEESGEGRMNLKCDPDQALALRDIFAAVLPGYHMNKKH
WNTIKLDGSIPEGEIQRMIDHSFALVVGGLPKKVREGMAVRHGRESLYGGQH

Specific function: Unknown

COG id: COG2315

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786793, Length=101, Percent_Identity=41.5841584158416, Blast_Score=80, Evalue=6e-17,
Organism=Escherichia coli, GI2367342, Length=113, Percent_Identity=31.858407079646, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007351 [H]

Pfam domain/function: PF04237 DUF419 [H]

EC number: NA

Molecular weight: Translated: 14679; Mature: 14679

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDMDVDVVRDYLLGKPEALEDFPFGPDVAVMKVRGKMFATLGEESGEGRMNLKCDPDQA
CCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCEEEEECCHHH
LALRDIFAAVLPGYHMNKKHWNTIKLDGSIPEGEIQRMIDHSFALVVGGLPKKVREGMAV
HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHEEECCCCHHHHHCHHH
RHGRESLYGGQH
HCCCHHCCCCCC
>Mature Secondary Structure
MIDMDVDVVRDYLLGKPEALEDFPFGPDVAVMKVRGKMFATLGEESGEGRMNLKCDPDQA
CCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCEEEEECCHHH
LALRDIFAAVLPGYHMNKKHWNTIKLDGSIPEGEIQRMIDHSFALVVGGLPKKVREGMAV
HHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHEEECCCCHHHHHCHHH
RHGRESLYGGQH
HCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]