Definition Alcanivorax borkumensis SK2 chromosome, complete genome.
Accession NC_008260
Length 3,120,143

Click here to switch to the map view.

The map label for this gene is 110833344

Identifier: 110833344

GI number: 110833344

Start: 525423

End: 527327

Strand: Direct

Name: 110833344

Synonym: ABO_0483

Alternate gene names: NA

Gene position: 525423-527327 (Clockwise)

Preceding gene: 110833343

Following gene: 110833346

Centisome position: 16.84

GC content: 52.76

Gene sequence:

>1905_bases
ATGGCGTTTGATTATGGGTCCATTGATTTGGGGCTGCGGAACCCGTTTAAAAAAGAAGGCTTGGTTACTGCGGTAACGGG
TGGGCTGAGTGCTTGTGTGGGGCTGGCTGTGCTGCTGATAGCGGCGGCAACGGTGAAGGAAAATACCGTGGCGGGCTGGA
TTTATATAGTGTTTGCGGTAGTGCTTCTAGGGGGCGGGGTTCGCGCCTTGAGTGGGGGTGCTTTTGCCATGTTGCGCTAT
TTTGTAGGTCGTAACCATCCCACCTCGCTGGCCTATAATTACAGCCCCTCGGAAAGCAGCACTGCGCAGGAAGAGTCCCG
TTATGTGGGCTACAAAGGCAGTACGCTAGAAGAAATGTTGATTGGTCGTAAGAATCCCACTTTTGTGGAGCCAGAAGGGT
TTCTGGCGCGCGCGCTGCACAGTCTACTTCCTAAGTTGTTGTTCATGCCGTATCCCATTCGTAACCTTGGGCAGCGCTTA
TTTGGCGCCTGGGTGAAAACAGCAGTGGCTATCATGGCGTATCTGTTTGTGGCGTTTGTCACGCTGGCGGGTTTTGTCGG
TGATATGGGTACCGTGATCTTTCCCCTCTATTCGGTGATCTTGAGCATTTATGTGATTGTGTTGTGGTGGAGAGCCGGTC
GCGCTATTGCTCGGCATCCGGAACGGCAGGTGGAGTCCATGGGCGGTGGCGACCTGGTTATGGTGATAGCGGTGTCTATT
GTGCTGCCGGTGATGGTGGGTCTTATGCTGGGCTCGGTTTCCCAAGTGGGCAATGTGGGTATTCAGCAGTGGCAGCAGTG
GATTAGCGTGCTCGACGGCCTTTATCCGTTAACGTATTTGTTGGTGTCATTGCTGTTTGCTGCAGTGGCTAGCGTGGGCA
TTTATCAGCTGCTTCGTCGTCGTTTGGCGTTGGCGAATCCGGTGTCGGAAGTGTCTGAGTTGCGGGAAAATTGGCAGGAG
TCGGTGCACCCCAATGAAATTTTTATCAACCTAGATAATCTAGTTATGGCTAACCGTCGTTATAAAGAAGTGCCCAACCG
GGTGTATCGGGAACTGGACCCGCAATTGGTTGAACAGGTGGAGGGCAAGGGGGGATTCAAGGGTGAGATGATCCAGGAAA
TCCAGCCGAAAGTGAAACCGATGAACTTGGGGGCAGGTTTTGACAAAGTACGAATGGCTCTGCTCATCGGGGGTAATATC
TTAGTGCTGATAGCGACAGGGCTAACCTTGTGGTTAGCGTTTGCCACGGTGGATCTTTATGAGGCTTTGGCCCAGCAAGG
CGTATCGGTGGAGGCGTTGTTGTCTGGTGATAGCAGTGCACTGTCGTTGGCGGTGAATTTACTGGTGTGGGGCGTTATTT
TTAGAGCTTTCGCGGCGCTGTTACGCGGAGCGGCCCACTTGTTTTTTTCTGAAATGCAGTTCGAATCGGTGATGATTTAC
TTCAAGTGTGAAGGCACATTTACGGAGTCGAAAATGTCCACGGGTACGGGCATCCATGATAGTACTCGTTCAGAAAATAC
CTTAATGCGCAGCAGCATTACACCCTGGATTGTGGTCTCAAGGTTGGTGACGTCCACGTTCGCAGCCACTGGTATGCGTA
ACCTTGAATTCCCGCGTTACGTGATGGAAATGCATAAGGCTCCAGAAGCGTTAGCCTCAATTAGGGCTGATGTGGTCACT
TTCTTGAAGGACCGCGAGTCCATCGCGTCGATTACAAGTGAGAGGGATTTGGGTAATGCATCGCAAATTTATCAGCTCAA
TCAGCAAACTCGAGCTCAGGTGTCACTGCCGACGGCGGGAGCTGATGAGGACGCTGCCGGGTATCTGCGCCAGGAGCAGG
CAGCGGACGATGTCGAAGCGAAGCCTAGCAATGGCGGCACCGCGGGAGATGAGCCGGTACCGTAA

Upstream 100 bases:

>100_bases
GCTTTTTTTGTTTTTCATGATAGCAACATAAAAGTCTTTAGAATCGATTCACGGAAAAGCGCACGGCCTAATCGGCCGCA
CCAAGGAAAGGAGAGTCGCT

Downstream 100 bases:

>100_bases
CACGCCTTGCTCGGTCTCCCTCCCGAAGCGGCTCCAAGAGTGAGCCGTTTTTTGTTGTCTGGCGTCAGGTATCACCTAAT
TGTGACCAAAACGCATTAAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 634; Mature: 633

Protein sequence:

>634_residues
MAFDYGSIDLGLRNPFKKEGLVTAVTGGLSACVGLAVLLIAAATVKENTVAGWIYIVFAVVLLGGGVRALSGGAFAMLRY
FVGRNHPTSLAYNYSPSESSTAQEESRYVGYKGSTLEEMLIGRKNPTFVEPEGFLARALHSLLPKLLFMPYPIRNLGQRL
FGAWVKTAVAIMAYLFVAFVTLAGFVGDMGTVIFPLYSVILSIYVIVLWWRAGRAIARHPERQVESMGGGDLVMVIAVSI
VLPVMVGLMLGSVSQVGNVGIQQWQQWISVLDGLYPLTYLLVSLLFAAVASVGIYQLLRRRLALANPVSEVSELRENWQE
SVHPNEIFINLDNLVMANRRYKEVPNRVYRELDPQLVEQVEGKGGFKGEMIQEIQPKVKPMNLGAGFDKVRMALLIGGNI
LVLIATGLTLWLAFATVDLYEALAQQGVSVEALLSGDSSALSLAVNLLVWGVIFRAFAALLRGAAHLFFSEMQFESVMIY
FKCEGTFTESKMSTGTGIHDSTRSENTLMRSSITPWIVVSRLVTSTFAATGMRNLEFPRYVMEMHKAPEALASIRADVVT
FLKDRESIASITSERDLGNASQIYQLNQQTRAQVSLPTAGADEDAAGYLRQEQAADDVEAKPSNGGTAGDEPVP

Sequences:

>Translated_634_residues
MAFDYGSIDLGLRNPFKKEGLVTAVTGGLSACVGLAVLLIAAATVKENTVAGWIYIVFAVVLLGGGVRALSGGAFAMLRY
FVGRNHPTSLAYNYSPSESSTAQEESRYVGYKGSTLEEMLIGRKNPTFVEPEGFLARALHSLLPKLLFMPYPIRNLGQRL
FGAWVKTAVAIMAYLFVAFVTLAGFVGDMGTVIFPLYSVILSIYVIVLWWRAGRAIARHPERQVESMGGGDLVMVIAVSI
VLPVMVGLMLGSVSQVGNVGIQQWQQWISVLDGLYPLTYLLVSLLFAAVASVGIYQLLRRRLALANPVSEVSELRENWQE
SVHPNEIFINLDNLVMANRRYKEVPNRVYRELDPQLVEQVEGKGGFKGEMIQEIQPKVKPMNLGAGFDKVRMALLIGGNI
LVLIATGLTLWLAFATVDLYEALAQQGVSVEALLSGDSSALSLAVNLLVWGVIFRAFAALLRGAAHLFFSEMQFESVMIY
FKCEGTFTESKMSTGTGIHDSTRSENTLMRSSITPWIVVSRLVTSTFAATGMRNLEFPRYVMEMHKAPEALASIRADVVT
FLKDRESIASITSERDLGNASQIYQLNQQTRAQVSLPTAGADEDAAGYLRQEQAADDVEAKPSNGGTAGDEPVP
>Mature_633_residues
AFDYGSIDLGLRNPFKKEGLVTAVTGGLSACVGLAVLLIAAATVKENTVAGWIYIVFAVVLLGGGVRALSGGAFAMLRYF
VGRNHPTSLAYNYSPSESSTAQEESRYVGYKGSTLEEMLIGRKNPTFVEPEGFLARALHSLLPKLLFMPYPIRNLGQRLF
GAWVKTAVAIMAYLFVAFVTLAGFVGDMGTVIFPLYSVILSIYVIVLWWRAGRAIARHPERQVESMGGGDLVMVIAVSIV
LPVMVGLMLGSVSQVGNVGIQQWQQWISVLDGLYPLTYLLVSLLFAAVASVGIYQLLRRRLALANPVSEVSELRENWQES
VHPNEIFINLDNLVMANRRYKEVPNRVYRELDPQLVEQVEGKGGFKGEMIQEIQPKVKPMNLGAGFDKVRMALLIGGNIL
VLIATGLTLWLAFATVDLYEALAQQGVSVEALLSGDSSALSLAVNLLVWGVIFRAFAALLRGAAHLFFSEMQFESVMIYF
KCEGTFTESKMSTGTGIHDSTRSENTLMRSSITPWIVVSRLVTSTFAATGMRNLEFPRYVMEMHKAPEALASIRADVVTF
LKDRESIASITSERDLGNASQIYQLNQQTRAQVSLPTAGADEDAAGYLRQEQAADDVEAKPSNGGTAGDEPVP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 69179; Mature: 69048

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFDYGSIDLGLRNPFKKEGLVTAVTGGLSACVGLAVLLIAAATVKENTVAGWIYIVFAV
CCCCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
VLLGGGVRALSGGAFAMLRYFVGRNHPTSLAYNYSPSESSTAQEESRYVGYKGSTLEEML
HHHCCCHHHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCHHHHHH
IGRKNPTFVEPEGFLARALHSLLPKLLFMPYPIRNLGQRLFGAWVKTAVAIMAYLFVAFV
HCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLAGFVGDMGTVIFPLYSVILSIYVIVLWWRAGRAIARHPERQVESMGGGDLVMVIAVSI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHCCCCCHHHHHHHHH
VLPVMVGLMLGSVSQVGNVGIQQWQQWISVLDGLYPLTYLLVSLLFAAVASVGIYQLLRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLALANPVSEVSELRENWQESVHPNEIFINLDNLVMANRRYKEVPNRVYRELDPQLVEQV
HHHHCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
EGKGGFKGEMIQEIQPKVKPMNLGAGFDKVRMALLIGGNILVLIATGLTLWLAFATVDLY
CCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
EALAQQGVSVEALLSGDSSALSLAVNLLVWGVIFRAFAALLRGAAHLFFSEMQFESVMIY
HHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEE
FKCEGTFTESKMSTGTGIHDSTRSENTLMRSSITPWIVVSRLVTSTFAATGMRNLEFPRY
EEECCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHH
VMEMHKAPEALASIRADVVTFLKDRESIASITSERDLGNASQIYQLNQQTRAQVSLPTAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCEEECCCCC
ADEDAAGYLRQEQAADDVEAKPSNGGTAGDEPVP
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFDYGSIDLGLRNPFKKEGLVTAVTGGLSACVGLAVLLIAAATVKENTVAGWIYIVFAV
CCCCCCEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH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CCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA