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The map label for this gene is ydfH [H]

Identifier: 110681126

GI number: 110681126

Start: 3854873

End: 3855559

Strand: Direct

Name: ydfH [H]

Synonym: RD1_3997

Alternate gene names: 110681126

Gene position: 3854873-3855559 (Clockwise)

Preceding gene: 110681120

Following gene: 110681127

Centisome position: 93.27

GC content: 58.22

Gene sequence:

>687_bases
ATGGCTCAGGCCACACAACTTGGCGAGCGGCGCACCAGCGTTGACGACATATTTGACCACCTTCACGCGGAAATCCTGTC
CTTGCGCCTGCGACCGGGTGACAAGATTTCCGAAGCGGATATCGCCGCCCGGTTCGGCGTGTCCAGACAGCCGGTGCGGG
ACGCTTTCAACCGGCTGGCCACGCTCGACCTGTTGGTGATCCGCCCGCAACGCGCCACCGAAGTGAAACGGTTTTCAGCG
CGTGAGATTGCCAAGTCACGTTTTGTGCGCGCCGCCGTGGAACAGGAAGTTCTGCGCCGCGCGGCGTGCTACTGTGATGC
AAGCGGCGCAGCAGACCTCGACGCGGCACTTGCGGCACAGGAACGGGCAATAAAACAGGATGACCTCGAAACATTCGGGG
CGCTGGATTACGCGTTCCATGAGACCCTGTGCCAGATCGCACAGGTGGATTTCGCCTTTGACGTCATCCGCAAAGAGAAA
TCAAACGTCGACCGTCTGTGCATTCTGAGCCTGTCAAAAGGGGATCGGATGCCTGATCTTGTGGCCGATCACCGGCGTAT
CGCGCAAGCTGTCAAAACCCATGATGCGCAAAGTGCGATGGAAAACGGCATGCGCCACCTTTCCCGGCTGGATGCAACGA
TCGAACAGATTTCGATCACAAATGCGAATTACTTCGAGCGCGAATAA

Upstream 100 bases:

>100_bases
AAGGATCGCAACGGGGTTGCGCATGAGTCCCACCCTGCCCTGCGGCGAAACCATTTCTGGCAGGACCCCTGAGGCGCAGA
AAGACGAAGGAGGTGATGCT

Downstream 100 bases:

>100_bases
TCCCGCAACCTGATCAGGCCGCGCTTCGCGCACCGTCTTTCAAACCATCAAACGGCGTATGACGATGCGGCTGCAGTCAG
GCGCAGCACGGGCTTTTTCA

Product: GntR family transcriptional regulator putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MAQATQLGERRTSVDDIFDHLHAEILSLRLRPGDKISEADIAARFGVSRQPVRDAFNRLATLDLLVIRPQRATEVKRFSA
REIAKSRFVRAAVEQEVLRRAACYCDASGAADLDAALAAQERAIKQDDLETFGALDYAFHETLCQIAQVDFAFDVIRKEK
SNVDRLCILSLSKGDRMPDLVADHRRIAQAVKTHDAQSAMENGMRHLSRLDATIEQISITNANYFERE

Sequences:

>Translated_228_residues
MAQATQLGERRTSVDDIFDHLHAEILSLRLRPGDKISEADIAARFGVSRQPVRDAFNRLATLDLLVIRPQRATEVKRFSA
REIAKSRFVRAAVEQEVLRRAACYCDASGAADLDAALAAQERAIKQDDLETFGALDYAFHETLCQIAQVDFAFDVIRKEK
SNVDRLCILSLSKGDRMPDLVADHRRIAQAVKTHDAQSAMENGMRHLSRLDATIEQISITNANYFERE
>Mature_227_residues
AQATQLGERRTSVDDIFDHLHAEILSLRLRPGDKISEADIAARFGVSRQPVRDAFNRLATLDLLVIRPQRATEVKRFSAR
EIAKSRFVRAAVEQEVLRRAACYCDASGAADLDAALAAQERAIKQDDLETFGALDYAFHETLCQIAQVDFAFDVIRKEKS
NVDRLCILSLSKGDRMPDLVADHRRIAQAVKTHDAQSAMENGMRHLSRLDATIEQISITNANYFERE

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=229, Percent_Identity=34.9344978165939, Blast_Score=125, Evalue=2e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25627; Mature: 25496

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQATQLGERRTSVDDIFDHLHAEILSLRLRPGDKISEADIAARFGVSRQPVRDAFNRLA
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
TLDLLVIRPQRATEVKRFSAREIAKSRFVRAAVEQEVLRRAACYCDASGAADLDAALAAQ
HHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ERAIKQDDLETFGALDYAFHETLCQIAQVDFAFDVIRKEKSNVDRLCILSLSKGDRMPDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
VADHRRIAQAVKTHDAQSAMENGMRHLSRLDATIEQISITNANYFERE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AQATQLGERRTSVDDIFDHLHAEILSLRLRPGDKISEADIAARFGVSRQPVRDAFNRLA
CCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
TLDLLVIRPQRATEVKRFSAREIAKSRFVRAAVEQEVLRRAACYCDASGAADLDAALAAQ
HHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
ERAIKQDDLETFGALDYAFHETLCQIAQVDFAFDVIRKEKSNVDRLCILSLSKGDRMPDL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHH
VADHRRIAQAVKTHDAQSAMENGMRHLSRLDATIEQISITNANYFERE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]