| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is prpE [C]
Identifier: 110681116
GI number: 110681116
Start: 3844445
End: 3846337
Strand: Direct
Name: prpE [C]
Synonym: RD1_3986
Alternate gene names: 110681116
Gene position: 3844445-3846337 (Clockwise)
Preceding gene: 110681108
Following gene: 110681120
Centisome position: 93.02
GC content: 60.01
Gene sequence:
>1893_bases ATGACATATAAAGACGTTTACCGGGCAAGTCTGGAAGATCCGGAACGCTTTTGGATGCAGGCAGCGGAAGCGATAGACTG GGACCGCAAACCCTCCAAAGCGCTGTTTGACCGCGGCGAACATATCTATGAGTGGTACGCGGACGGGCTCGTCAACGGCT GTTACAACGCGGTTGACCGTCACGTGACCGCCGGGCGCGGTGGGCAGGCGGCGATCATATACGACAGCCCCGTTACAGGG ACGAAATCTACGCTCAGCTATGCCGATCTGCAAACCAAGGTGGCGTCCTTGGCCGGTGCGATGGTTGCCCAAGGTGTTGG CAAGGGCGACCGGGTCATCATCTACATGCCGATGATCCCCGAAGCGCTGGAGGCGATGCTGGCCTGTGCGCGCATCGGTG CGGTGCATTCTGTCGTCTTTGGCGGCTTTGCCGCGAACGAGTTGGCCGTGCGCATTGATGATTGCCAGCCCAAGGCGATA CTGGCTGCCTCTTGCGGGTTGGAACCGGGGCGCGTGGTCCATTACAAACCGCTGCTGGATGGGGCCATCGAACTGGCCGA CCATAAACCTGACTTTTGCCTGATCCTGCAACGGGAACAGGAAATGGCCGAGTTGACCCCCGGTCGTGATCTTGACTGGC ACGACGCCCAAAACGGTGTGCCGCCCGCCGACTGTGTCCCGGTCGAGGGCAACCACCCGGCTTATATCCTCTATACGTCC GGCACGACGGGCGCGCCCAAAGGTGTGGTCAGACCGACCGGCGGTCATCTGGTCGCGCTGAATTGGACGATGAAAAACAT CTATGACGTGGACCCCGGGGATGTCTTCTGGGCGGCCTCGGATGTGGGTTGGGTCGTGGGCCACAGCTACATTTGCTACG GGCCTCTGATCCATGGCAATACAACCGTGGTGTTCGAAGGCAAACCCGTGGGCACGCCGGACGCAGGCACCTTCTGGCGT GTGATCTCTGAACATAACGTGCGCAGCTTTTTCACCGCCCCGACAGCGATCCGCGCGGTAAAACGCGAAGACCCCAAGGG GCTGGAGCGGGAAAAATATGACCTATCTTGCCTGCGGTCCCTCTATCTGGCGGGCGAGCGGGCTGACCCTGATACGATCC AATGGGCGCAGGATATCCTGAACGTCCCCGTCTATGACCATTGGTGGCAGACCGAAACGGGTTGGACGATCGCGGGCAAT CCAGCGGGTCTTGAGGCGCTGCCGGTCAAGATCGGCTCCCCCACGGTCGCGATGCCGGGATATGACGTGCAAATCCTTGA CGAAGCAGGCCATCCGCAAAAGCCCGGTGAGTTGGGGGCCATCGCGATCAAACTGCCGCTGCCACCCGGCACATTACCCA CCCTGTGGAACGCTGCGGATCGCTACAAGAAAAGCTACCTCAACGCTTTTCCCGGATATTATGAAACCGGCGATGCGGGC ATGATCGACGAGGACGGATATCTCTATATCATGGCGCGCACCGATGATGTGATCAACGTCGCAGGCCACCGCCTGTCCAC GGGTGCCATGGAAGAGGTGCTCGCCAGCCACCCCGATGTGGCGGAATGCGCGGTCGTCGGTGTGAGTGACCAGCTAAAAG GGCAATCTCCCCTTGGTCTTGTCTGCCTGACCAAAGGCGTCAACCGACCCCACGGCGAAATTACCTCCGAATGCGTCAAG CTGATCCGGGACAAGATTGGCCCCGTCGCGGCGTTCAAGAATGCGCTGGTTGTGGATCGCCTGCCCAAGACCCGGTCGGG CAAAATCCTGCGGGCAACCGTTGTCAAGATTGCGGACAATCAGGAGTTCAAACTGCCCGCCACCATAGATGACCCGGCCA TTCTGGACGAAATCAGAGACGCCCTGCAAACGATCGGATACGCCAAGGGCTGA
Upstream 100 bases:
>100_bases TAACCTTTCAAAGCAAGACAGATACATGTTCCGCCAAGGCTTGCCCTCGCTTTAACGTGGGCGTAACCATAAGCAATTGC CAAGCTTAGGGGTGCCAGAA
Downstream 100 bases:
>100_bases TAGCTTTTGCCGGGTTGAACGAAAAAAGCAGCCCCGAATGGGACTGCTTTGACTTATCGCGTTTGACGAAATACCTGAGG CATCGCGTACTACTCAAGGC
Product: propionate--CoA ligase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 630; Mature: 629
Protein sequence:
>630_residues MTYKDVYRASLEDPERFWMQAAEAIDWDRKPSKALFDRGEHIYEWYADGLVNGCYNAVDRHVTAGRGGQAAIIYDSPVTG TKSTLSYADLQTKVASLAGAMVAQGVGKGDRVIIYMPMIPEALEAMLACARIGAVHSVVFGGFAANELAVRIDDCQPKAI LAASCGLEPGRVVHYKPLLDGAIELADHKPDFCLILQREQEMAELTPGRDLDWHDAQNGVPPADCVPVEGNHPAYILYTS GTTGAPKGVVRPTGGHLVALNWTMKNIYDVDPGDVFWAASDVGWVVGHSYICYGPLIHGNTTVVFEGKPVGTPDAGTFWR VISEHNVRSFFTAPTAIRAVKREDPKGLEREKYDLSCLRSLYLAGERADPDTIQWAQDILNVPVYDHWWQTETGWTIAGN PAGLEALPVKIGSPTVAMPGYDVQILDEAGHPQKPGELGAIAIKLPLPPGTLPTLWNAADRYKKSYLNAFPGYYETGDAG MIDEDGYLYIMARTDDVINVAGHRLSTGAMEEVLASHPDVAECAVVGVSDQLKGQSPLGLVCLTKGVNRPHGEITSECVK LIRDKIGPVAAFKNALVVDRLPKTRSGKILRATVVKIADNQEFKLPATIDDPAILDEIRDALQTIGYAKG
Sequences:
>Translated_630_residues MTYKDVYRASLEDPERFWMQAAEAIDWDRKPSKALFDRGEHIYEWYADGLVNGCYNAVDRHVTAGRGGQAAIIYDSPVTG TKSTLSYADLQTKVASLAGAMVAQGVGKGDRVIIYMPMIPEALEAMLACARIGAVHSVVFGGFAANELAVRIDDCQPKAI LAASCGLEPGRVVHYKPLLDGAIELADHKPDFCLILQREQEMAELTPGRDLDWHDAQNGVPPADCVPVEGNHPAYILYTS GTTGAPKGVVRPTGGHLVALNWTMKNIYDVDPGDVFWAASDVGWVVGHSYICYGPLIHGNTTVVFEGKPVGTPDAGTFWR VISEHNVRSFFTAPTAIRAVKREDPKGLEREKYDLSCLRSLYLAGERADPDTIQWAQDILNVPVYDHWWQTETGWTIAGN PAGLEALPVKIGSPTVAMPGYDVQILDEAGHPQKPGELGAIAIKLPLPPGTLPTLWNAADRYKKSYLNAFPGYYETGDAG MIDEDGYLYIMARTDDVINVAGHRLSTGAMEEVLASHPDVAECAVVGVSDQLKGQSPLGLVCLTKGVNRPHGEITSECVK LIRDKIGPVAAFKNALVVDRLPKTRSGKILRATVVKIADNQEFKLPATIDDPAILDEIRDALQTIGYAKG >Mature_629_residues TYKDVYRASLEDPERFWMQAAEAIDWDRKPSKALFDRGEHIYEWYADGLVNGCYNAVDRHVTAGRGGQAAIIYDSPVTGT KSTLSYADLQTKVASLAGAMVAQGVGKGDRVIIYMPMIPEALEAMLACARIGAVHSVVFGGFAANELAVRIDDCQPKAIL AASCGLEPGRVVHYKPLLDGAIELADHKPDFCLILQREQEMAELTPGRDLDWHDAQNGVPPADCVPVEGNHPAYILYTSG TTGAPKGVVRPTGGHLVALNWTMKNIYDVDPGDVFWAASDVGWVVGHSYICYGPLIHGNTTVVFEGKPVGTPDAGTFWRV ISEHNVRSFFTAPTAIRAVKREDPKGLEREKYDLSCLRSLYLAGERADPDTIQWAQDILNVPVYDHWWQTETGWTIAGNP AGLEALPVKIGSPTVAMPGYDVQILDEAGHPQKPGELGAIAIKLPLPPGTLPTLWNAADRYKKSYLNAFPGYYETGDAGM IDEDGYLYIMARTDDVINVAGHRLSTGAMEEVLASHPDVAECAVVGVSDQLKGQSPLGLVCLTKGVNRPHGEITSECVKL IRDKIGPVAAFKNALVVDRLPKTRSGKILRATVVKIADNQEFKLPATIDDPAILDEIRDALQTIGYAKG
Specific function: Catalyzes The Synthesis Of Propionyl-CoA From Propionate And CoA. Also Converts Acetate To Acetyl-CoA But With A Lower Specific Activity (By Similarity). [C]
COG id: COG0365
COG function: function code I; Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI13375727, Length=623, Percent_Identity=52.9695024077047, Blast_Score=702, Evalue=0.0, Organism=Homo sapiens, GI8923896, Length=655, Percent_Identity=35.8778625954198, Blast_Score=378, Evalue=1e-104, Organism=Homo sapiens, GI253970489, Length=668, Percent_Identity=35.1796407185629, Blast_Score=373, Evalue=1e-103, Organism=Homo sapiens, GI28416953, Length=649, Percent_Identity=35.2850539291217, Blast_Score=348, Evalue=6e-96, Organism=Homo sapiens, GI38505220, Length=522, Percent_Identity=27.3946360153257, Blast_Score=177, Evalue=3e-44, Organism=Homo sapiens, GI42544132, Length=524, Percent_Identity=25.9541984732824, Blast_Score=167, Evalue=3e-41, Organism=Homo sapiens, GI115511026, Length=517, Percent_Identity=25.7253384912959, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI122937307, Length=502, Percent_Identity=27.0916334661355, Blast_Score=155, Evalue=1e-37, Organism=Homo sapiens, GI58082049, Length=496, Percent_Identity=25.8064516129032, Blast_Score=147, Evalue=3e-35, Organism=Homo sapiens, GI31982927, Length=657, Percent_Identity=23.4398782343988, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI157311624, Length=496, Percent_Identity=25, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI157311622, Length=496, Percent_Identity=25, Blast_Score=140, Evalue=3e-33, Organism=Homo sapiens, GI195947378, Length=424, Percent_Identity=26.6509433962264, Blast_Score=108, Evalue=2e-23, Organism=Homo sapiens, GI42544134, Length=351, Percent_Identity=23.3618233618234, Blast_Score=90, Evalue=7e-18, Organism=Homo sapiens, GI187761345, Length=427, Percent_Identity=27.1662763466042, Blast_Score=90, Evalue=7e-18, Organism=Homo sapiens, GI187761343, Length=427, Percent_Identity=27.1662763466042, Blast_Score=90, Evalue=7e-18, Organism=Homo sapiens, GI156151445, Length=559, Percent_Identity=23.2558139534884, Blast_Score=74, Evalue=6e-13, Organism=Escherichia coli, GI1786529, Length=632, Percent_Identity=43.3544303797468, Blast_Score=475, Evalue=1e-135, Organism=Escherichia coli, GI1790505, Length=634, Percent_Identity=38.1703470031546, Blast_Score=412, Evalue=1e-116, Organism=Escherichia coli, GI145693145, Length=516, Percent_Identity=23.6434108527132, Blast_Score=113, Evalue=5e-26, Organism=Escherichia coli, GI221142682, Length=543, Percent_Identity=23.572744014733, Blast_Score=102, Evalue=7e-23, Organism=Escherichia coli, GI1786801, Length=462, Percent_Identity=24.025974025974, Blast_Score=96, Evalue=8e-21, Organism=Escherichia coli, GI1788107, Length=551, Percent_Identity=23.2304900181488, Blast_Score=77, Evalue=3e-15, Organism=Caenorhabditis elegans, GI71982997, Length=643, Percent_Identity=34.2146189735614, Blast_Score=324, Evalue=1e-88, Organism=Caenorhabditis elegans, GI71983001, Length=643, Percent_Identity=34.2146189735614, Blast_Score=323, Evalue=1e-88, Organism=Caenorhabditis elegans, GI17569507, Length=650, Percent_Identity=21.2307692307692, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17559526, Length=551, Percent_Identity=21.2341197822142, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17531443, Length=529, Percent_Identity=22.4952741020794, Blast_Score=87, Evalue=4e-17, Organism=Caenorhabditis elegans, GI71985884, Length=385, Percent_Identity=23.3766233766234, Blast_Score=85, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17538037, Length=129, Percent_Identity=33.3333333333333, Blast_Score=81, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17560308, Length=553, Percent_Identity=24.0506329113924, Blast_Score=80, Evalue=5e-15, Organism=Caenorhabditis elegans, GI17557194, Length=181, Percent_Identity=27.0718232044199, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71996755, Length=554, Percent_Identity=21.6606498194946, Blast_Score=77, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6323182, Length=653, Percent_Identity=37.0597243491577, Blast_Score=416, Evalue=1e-117, Organism=Saccharomyces cerevisiae, GI6319264, Length=648, Percent_Identity=36.5740740740741, Blast_Score=402, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6319699, Length=368, Percent_Identity=27.1739130434783, Blast_Score=105, Evalue=2e-23, Organism=Drosophila melanogaster, GI21355225, Length=634, Percent_Identity=46.6876971608833, Blast_Score=610, Evalue=1e-175, Organism=Drosophila melanogaster, GI24667955, Length=648, Percent_Identity=36.8827160493827, Blast_Score=384, Evalue=1e-106, Organism=Drosophila melanogaster, GI62472339, Length=558, Percent_Identity=38.5304659498208, Blast_Score=349, Evalue=3e-96, Organism=Drosophila melanogaster, GI24667959, Length=527, Percent_Identity=38.3301707779886, Blast_Score=325, Evalue=5e-89, Organism=Drosophila melanogaster, GI19922652, Length=530, Percent_Identity=23.2075471698113, Blast_Score=99, Evalue=1e-20, Organism=Drosophila melanogaster, GI24648260, Length=364, Percent_Identity=25.2747252747253, Blast_Score=95, Evalue=1e-19, Organism=Drosophila melanogaster, GI21356441, Length=385, Percent_Identity=24.4155844155844, Blast_Score=83, Evalue=6e-16, Organism=Drosophila melanogaster, GI24648257, Length=372, Percent_Identity=26.0752688172043, Blast_Score=82, Evalue=2e-15, Organism=Drosophila melanogaster, GI24648253, Length=365, Percent_Identity=24.9315068493151, Blast_Score=81, Evalue=3e-15, Organism=Drosophila melanogaster, GI24648255, Length=365, Percent_Identity=24.9315068493151, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI21355181, Length=552, Percent_Identity=21.7391304347826, Blast_Score=80, Evalue=6e-15, Organism=Drosophila melanogaster, GI281365686, Length=370, Percent_Identity=22.1621621621622, Blast_Score=77, Evalue=2e-14, Organism=Drosophila melanogaster, GI21356947, Length=359, Percent_Identity=25.0696378830084, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24653035, Length=373, Percent_Identity=22.5201072386059, Blast_Score=75, Evalue=1e-13, Organism=Drosophila melanogaster, GI18859661, Length=538, Percent_Identity=22.3048327137546, Blast_Score=75, Evalue=2e-13, Organism=Drosophila melanogaster, GI20130357, Length=381, Percent_Identity=23.0971128608924, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.2.1.17 [C]
Molecular weight: Translated: 68400; Mature: 68269
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTYKDVYRASLEDPERFWMQAAEAIDWDRKPSKALFDRGEHIYEWYADGLVNGCYNAVDR CCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH HVTAGRGGQAAIIYDSPVTGTKSTLSYADLQTKVASLAGAMVAQGVGKGDRVIIYMPMIP CEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH EALEAMLACARIGAVHSVVFGGFAANELAVRIDDCQPKAILAASCGLEPGRVVHYKPLLD HHHHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCEEEEECCCCCCCCEEEEECHHC GAIELADHKPDFCLILQREQEMAELTPGRDLDWHDAQNGVPPADCVPVEGNHPAYILYTS CHHHHCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEC GTTGAPKGVVRPTGGHLVALNWTMKNIYDVDPGDVFWAASDVGWVVGHSYICYGPLIHGN CCCCCCCCCEECCCCEEEEEEEEECCEEECCCCCEEEEECCCCHHHCCCEEEECCEEECC TTVVFEGKPVGTPDAGTFWRVISEHNVRSFFTAPTAIRAVKREDPKGLEREKYDLSCLRS EEEEECCCCCCCCCCCHHHHHHHCCCCHHEECCHHHHHHHHCCCCCCCCCHHHHHHHHHH LYLAGERADPDTIQWAQDILNVPVYDHWWQTETGWTIAGNPAGLEALPVKIGSPTVAMPG HHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCEEECCC YDVQILDEAGHPQKPGELGAIAIKLPLPPGTLPTLWNAADRYKKSYLNAFPGYYETGDAG CCEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC MIDEDGYLYIMARTDDVINVAGHRLSTGAMEEVLASHPDVAECAVVGVSDQLKGQSPLGL EECCCCEEEEEECCCCCHHHCCCCCCHHHHHHHHHCCCCHHHEEEECCCHHHCCCCCCEE VCLTKGVNRPHGEITSECVKLIRDKIGPVAAFKNALVVDRLPKTRSGKILRATVVKIADN EEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCEECCCCCCCCCCEEEEEEEEEECC QEFKLPATIDDPAILDEIRDALQTIGYAKG CCEECCCCCCCHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure TYKDVYRASLEDPERFWMQAAEAIDWDRKPSKALFDRGEHIYEWYADGLVNGCYNAVDR CHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHH HVTAGRGGQAAIIYDSPVTGTKSTLSYADLQTKVASLAGAMVAQGVGKGDRVIIYMPMIP CEECCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCH EALEAMLACARIGAVHSVVFGGFAANELAVRIDDCQPKAILAASCGLEPGRVVHYKPLLD HHHHHHHHHHHHHHHHHHHHCCEECCEEEEEEECCCCCEEEEECCCCCCCCEEEEECHHC GAIELADHKPDFCLILQREQEMAELTPGRDLDWHDAQNGVPPADCVPVEGNHPAYILYTS CHHHHCCCCCCEEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEEC GTTGAPKGVVRPTGGHLVALNWTMKNIYDVDPGDVFWAASDVGWVVGHSYICYGPLIHGN CCCCCCCCCEECCCCEEEEEEEEECCEEECCCCCEEEEECCCCHHHCCCEEEECCEEECC TTVVFEGKPVGTPDAGTFWRVISEHNVRSFFTAPTAIRAVKREDPKGLEREKYDLSCLRS EEEEECCCCCCCCCCCHHHHHHHCCCCHHEECCHHHHHHHHCCCCCCCCCHHHHHHHHHH LYLAGERADPDTIQWAQDILNVPVYDHWWQTETGWTIAGNPAGLEALPVKIGSPTVAMPG HHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCEEECCC YDVQILDEAGHPQKPGELGAIAIKLPLPPGTLPTLWNAADRYKKSYLNAFPGYYETGDAG CCEEEEECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC MIDEDGYLYIMARTDDVINVAGHRLSTGAMEEVLASHPDVAECAVVGVSDQLKGQSPLGL EECCCCEEEEEECCCCCHHHCCCCCCHHHHHHHHHCCCCHHHEEEECCCHHHCCCCCCEE VCLTKGVNRPHGEITSECVKLIRDKIGPVAAFKNALVVDRLPKTRSGKILRATVVKIADN EEEECCCCCCCHHHHHHHHHHHHHHCCHHHHHHCCCEECCCCCCCCCCEEEEEEEEEECC QEFKLPATIDDPAILDEIRDALQTIGYAKG CCEECCCCCCCHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043; 1339433 [H]