| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is zntR [C]
Identifier: 110681098
GI number: 110681098
Start: 3823483
End: 3823854
Strand: Direct
Name: zntR [C]
Synonym: RD1_3965
Alternate gene names: 110681098
Gene position: 3823483-3823854 (Clockwise)
Preceding gene: 110681094
Following gene: 110681101
Centisome position: 92.51
GC content: 56.99
Gene sequence:
>372_bases ATGACATCGGACCGATTGACGTTCAAAGAGATGTGCGCCGAATTCGACGTCACACCGCGCACGCTGCGCTATTACGAATA CATTGAATTGCTGCAGCCGGACCGCGAGGGGCGCGCGCGGTTTTACGGGCCGCGCGAACGCGCACGGATGAAGCTGATCC TGCGTGGTCGGAAGTTCGGCTTTCAGCTCGAAGATATCCGCCAGTGGCTGTTGATCTATGAGAATGAGGGCACCGATGCA CAGATGCGCAAATGGGTCGCACTTGCCGATGGTCAATTGGAGCAACTGGCAGAAGAACGCGCCCAGCTGGACGATGCAAT TGCGGAATTAAAGCGGCTGCGCGATACCACGGCAGCCGCTTTGAAAAGCTAA
Upstream 100 bases:
>100_bases TCTGGCCCCCTTTATCACAGCACTGTGTCGCCAAGAGCAAGGGGGAGTGTTGCGCTCGCGTCTTTTGCGTCCTAGCCTGA GCCCAAGGGAGAGAGCCGCA
Downstream 100 bases:
>100_bases GGGTGCTCGCCCTTACGCTCCAGAAATTGTGCCAGTCTCTCCAGATTGGCGGCAGCCATGATCAATTGAGACACGACCGA TGTCGGATGTTCACCCGCAG
Product: transcriptional regulator, putative
Products: NA
Alternate protein names: Transcriptional Regulator MerR Family; Transcriptional Regulator; Transcriptional Regulator MerR Family Protein; MerR-Family Transcriptional Regulator; Mercuric Resistance Operon Regulatory Protein MerR; Transcriptional Regulator Merr Family; Mercuric Resistance Operon Regulatory Protein; Regulatory Gene Of GnyRDBHAL Cluster GnyR; Regulatory Protein; MerR Family Regulatory Family; Transcription Regulator Protein; Regulatory Protein MerR
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MTSDRLTFKEMCAEFDVTPRTLRYYEYIELLQPDREGRARFYGPRERARMKLILRGRKFGFQLEDIRQWLLIYENEGTDA QMRKWVALADGQLEQLAEERAQLDDAIAELKRLRDTTAAALKS
Sequences:
>Translated_123_residues MTSDRLTFKEMCAEFDVTPRTLRYYEYIELLQPDREGRARFYGPRERARMKLILRGRKFGFQLEDIRQWLLIYENEGTDA QMRKWVALADGQLEQLAEERAQLDDAIAELKRLRDTTAAALKS >Mature_122_residues TSDRLTFKEMCAEFDVTPRTLRYYEYIELLQPDREGRARFYGPRERARMKLILRGRKFGFQLEDIRQWLLIYENEGTDAQ MRKWVALADGQLEQLAEERAQLDDAIAELKRLRDTTAAALKS
Specific function: Zinc-Responsive Transcriptional Regulator Of Znta. [C]
COG id: COG0789
COG function: function code K; Predicted transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14578; Mature: 14447
Theoretical pI: Translated: 6.79; Mature: 6.79
Prosite motif: PS50937 HTH_MERR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSDRLTFKEMCAEFDVTPRTLRYYEYIELLQPDREGRARFYGPRERARMKLILRGRKFG CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC FQLEDIRQWLLIYENEGTDAQMRKWVALADGQLEQLAEERAQLDDAIAELKRLRDTTAAA CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKS HCC >Mature Secondary Structure TSDRLTFKEMCAEFDVTPRTLRYYEYIELLQPDREGRARFYGPRERARMKLILRGRKFG CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCC FQLEDIRQWLLIYENEGTDAQMRKWVALADGQLEQLAEERAQLDDAIAELKRLRDTTAAA CCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKS HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA