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The map label for this gene is pcaB [H]

Identifier: 110681070

GI number: 110681070

Start: 3796060

End: 3797391

Strand: Direct

Name: pcaB [H]

Synonym: RD1_3935

Alternate gene names: 110681070

Gene position: 3796060-3797391 (Clockwise)

Preceding gene: 110681069

Following gene: 110681071

Centisome position: 91.85

GC content: 64.41

Gene sequence:

>1332_bases
ATGGCCGCAAGCGTTTTTGACAGCCCGCTTTACAGCAAACTCTTTCCGGTCGGTGAGACGGGCCGGCTGTTTTCAGACTC
CGCCGCGATCCGTGCAATGCTGCTGGTGGAAGGCGCATTGGCCAAGGCGCAGGGCAAATTGGGCATCATCCCCGAAACAA
GCGCCGCCGCCATTCACCGCGCCACCCTTGAAATTCAGATCGACCCCGGCGCGCTGGCCACATCCACAGGGCAGAACGGC
GTCTGCGTCCCCGGTCTGGTGGACGCCTTTCGCGCCGAGATGAACGCACCCGAACATGCGCAATTCGTTCATTGGGGGGC
CACATCGCAGGACATCATCGACACAGCACTGATGCTGCGGCTGCGTCAGGCCCTCGCGCTGGCCGAAAGTGACCTCAGCG
AGTTGTTGTCGCGTCTGGCCGCTGCGGCAGAAGAACATGCAACAACCCCCATGGCCGCGCGCACATATGGGCAGGTTGCG
ACACCGACAACATGGGGCGCGGTTGTGGCGCAATGGGGCATGCCCCTCGCGGATGCGCTGGATGCTTTGCCGCATCTGCG
TCAATCGAGTCTCTTCGTCTCGCTCTCAGGCGCGTCCGGGACATCCGCCGCACTGGGCGCACAGGCCCCTGATCTGCGCC
GCGCGCTGGCGGCGGGGCTGGGGCTGCAGGATCCTGAAAGGTCGTGGCACACAGACCGCACGCCCCTGTTGCGGATCAGC
GATTGGCTGGGACATGTGGCAACCATACTTGGCAGTATGGGCAGCAGCCTGAACGGGCTTGCCGCCAGCGGGATTGACGA
GGTCGCGTTTGACAGACGCGGGGCTTCCTCCACCATGCCGCAAAAGCAAAACCCGATTGCGGCCACTGGGCTTGTGGCGC
TTTCCAACCAATCATGCGCTTTGCGCGCTGGCATGACATCCGCCGCGCAGCACCGGCACCAACGCGACGGCACCGCATGG
TTCAGCGAATGGATGCTCTTGCCACAGATCGTCCTGACGACCGCATCAGCGTTGCAGATCGCCACCGGGCTGGCGGGCGA
AGTGCAGCCAAACGTAGCACAGATGCAGGCGGGGTTGGAAACCGGCAACGGGCTGATCCACGCCGAAGCGCTGAGTTTCG
CGCTTAGCCAGGACATGCCGAGGCCGCAGGCACAGGCGGCGACCAAAGCGCTCTGTGCCCAAGCAGTGGCTGAAGGCGCG
TCCCTGCCCGATCTTGCACGCGCGGCCTACCCCCACCTGCCGCAGACCTTATTTCAGGCCGGGCATCAGCTTGGTCAGGC
CCCGGAAGAGGCGCGGGCCTTTGCCGCGCGCATCATGAGCATGGCCAAGTGA

Upstream 100 bases:

>100_bases
TGCGCAGAGACTGCACCAGATGGATTGCGGCCATTCCCCGTTTTTCTCAGACCCCGAAACCCTCGCCACCCATATTGATC
AGGCGATCCGAGGATAACCG

Downstream 100 bases:

>100_bases
AACCCGCCGTCGTTTTCATCCTGATGACCATGATGATTGATGCGATGGGCATCGGGCTGATCATCCCCGTCATGCCCGAC
CTGTTCCAGGAGGTGGGCGC

Product: 3-carboxy-cis,cis-muconate cycloisomerase, putative

Products: NA

Alternate protein names: 3-carboxymuconate lactonizing enzyme; CMLE [H]

Number of amino acids: Translated: 443; Mature: 442

Protein sequence:

>443_residues
MAASVFDSPLYSKLFPVGETGRLFSDSAAIRAMLLVEGALAKAQGKLGIIPETSAAAIHRATLEIQIDPGALATSTGQNG
VCVPGLVDAFRAEMNAPEHAQFVHWGATSQDIIDTALMLRLRQALALAESDLSELLSRLAAAAEEHATTPMAARTYGQVA
TPTTWGAVVAQWGMPLADALDALPHLRQSSLFVSLSGASGTSAALGAQAPDLRRALAAGLGLQDPERSWHTDRTPLLRIS
DWLGHVATILGSMGSSLNGLAASGIDEVAFDRRGASSTMPQKQNPIAATGLVALSNQSCALRAGMTSAAQHRHQRDGTAW
FSEWMLLPQIVLTTASALQIATGLAGEVQPNVAQMQAGLETGNGLIHAEALSFALSQDMPRPQAQAATKALCAQAVAEGA
SLPDLARAAYPHLPQTLFQAGHQLGQAPEEARAFAARIMSMAK

Sequences:

>Translated_443_residues
MAASVFDSPLYSKLFPVGETGRLFSDSAAIRAMLLVEGALAKAQGKLGIIPETSAAAIHRATLEIQIDPGALATSTGQNG
VCVPGLVDAFRAEMNAPEHAQFVHWGATSQDIIDTALMLRLRQALALAESDLSELLSRLAAAAEEHATTPMAARTYGQVA
TPTTWGAVVAQWGMPLADALDALPHLRQSSLFVSLSGASGTSAALGAQAPDLRRALAAGLGLQDPERSWHTDRTPLLRIS
DWLGHVATILGSMGSSLNGLAASGIDEVAFDRRGASSTMPQKQNPIAATGLVALSNQSCALRAGMTSAAQHRHQRDGTAW
FSEWMLLPQIVLTTASALQIATGLAGEVQPNVAQMQAGLETGNGLIHAEALSFALSQDMPRPQAQAATKALCAQAVAEGA
SLPDLARAAYPHLPQTLFQAGHQLGQAPEEARAFAARIMSMAK
>Mature_442_residues
AASVFDSPLYSKLFPVGETGRLFSDSAAIRAMLLVEGALAKAQGKLGIIPETSAAAIHRATLEIQIDPGALATSTGQNGV
CVPGLVDAFRAEMNAPEHAQFVHWGATSQDIIDTALMLRLRQALALAESDLSELLSRLAAAAEEHATTPMAARTYGQVAT
PTTWGAVVAQWGMPLADALDALPHLRQSSLFVSLSGASGTSAALGAQAPDLRRALAAGLGLQDPERSWHTDRTPLLRISD
WLGHVATILGSMGSSLNGLAASGIDEVAFDRRGASSTMPQKQNPIAATGLVALSNQSCALRAGMTSAAQHRHQRDGTAWF
SEWMLLPQIVLTTASALQIATGLAGEVQPNVAQMQAGLETGNGLIHAEALSFALSQDMPRPQAQAATKALCAQAVAEGAS
LPDLARAAYPHLPQTLFQAGHQLGQAPEEARAFAARIMSMAK

Specific function: Catalyzes an anti cycloisomerization [H]

COG id: COG0015

COG function: function code F; Adenylosuccinate lyase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the class-II fumarase/aspartase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019468
- InterPro:   IPR003031
- InterPro:   IPR000362
- InterPro:   IPR020557
- InterPro:   IPR008948
- InterPro:   IPR022761
- InterPro:   IPR012789 [H]

Pfam domain/function: PF10397 ADSL_C; PF00206 Lyase_1 [H]

EC number: =5.5.1.2 [H]

Molecular weight: Translated: 46220; Mature: 46089

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAASVFDSPLYSKLFPVGETGRLFSDSAAIRAMLLVEGALAKAQGKLGIIPETSAAAIHR
CCCCHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHEE
ATLEIQIDPGALATSTGQNGVCVPGLVDAFRAEMNAPEHAQFVHWGATSQDIIDTALMLR
EEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHH
LRQALALAESDLSELLSRLAAAAEEHATTPMAARTYGQVATPTTWGAVVAQWGMPLADAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHCCCHHHHH
DALPHLRQSSLFVSLSGASGTSAALGAQAPDLRRALAAGLGLQDPERSWHTDRTPLLRIS
HHHHHHCCCCEEEEEECCCCCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
DWLGHVATILGSMGSSLNGLAASGIDEVAFDRRGASSTMPQKQNPIAATGLVALSNQSCA
HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHEEEECCCCCC
LRAGMTSAAQHRHQRDGTAWFSEWMLLPQIVLTTASALQIATGLAGEVQPNVAQMQAGLE
HHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
TGNGLIHAEALSFALSQDMPRPQAQAATKALCAQAVAEGASLPDLARAAYPHLPQTLFQA
CCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
GHQLGQAPEEARAFAARIMSMAK
HHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AASVFDSPLYSKLFPVGETGRLFSDSAAIRAMLLVEGALAKAQGKLGIIPETSAAAIHR
CCCHHCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHEE
ATLEIQIDPGALATSTGQNGVCVPGLVDAFRAEMNAPEHAQFVHWGATSQDIIDTALMLR
EEEEEEECCCCEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHH
LRQALALAESDLSELLSRLAAAAEEHATTPMAARTYGQVATPTTWGAVVAQWGMPLADAL
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHHHHHHCCCHHHHH
DALPHLRQSSLFVSLSGASGTSAALGAQAPDLRRALAAGLGLQDPERSWHTDRTPLLRIS
HHHHHHCCCCEEEEEECCCCCCHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
DWLGHVATILGSMGSSLNGLAASGIDEVAFDRRGASSTMPQKQNPIAATGLVALSNQSCA
HHHHHHHHHHHHHCCCCCCHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHEEEECCCCCC
LRAGMTSAAQHRHQRDGTAWFSEWMLLPQIVLTTASALQIATGLAGEVQPNVAQMQAGLE
HHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
TGNGLIHAEALSFALSQDMPRPQAQAATKALCAQAVAEGASLPDLARAAYPHLPQTLFQA
CCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHH
GHQLGQAPEEARAFAARIMSMAK
HHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8063101 [H]