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The map label for this gene is ydcN [C]

Identifier: 110680995

GI number: 110680995

Start: 3725887

End: 3726576

Strand: Direct

Name: ydcN [C]

Synonym: RD1_3854

Alternate gene names: 110680995

Gene position: 3725887-3726576 (Clockwise)

Preceding gene: 110680987

Following gene: 110680998

Centisome position: 90.15

GC content: 56.23

Gene sequence:

>690_bases
TTGTGCCGGGATAAAAGAGAAAGCGCCTCAGCTGTGAATATTGAAAAAACCAGTCACGATATGGCAGTCAAACTGGCGCA
GAACCCGCACAGCATCCGCGAGGGCGAGCGTGAAAAAGTTCTCGAAGTGGCGATTGGCCGGGAAGTACGCGGCCATCGTA
AGCAACATGGCATCACGGTCGCCGAGTTATCGGCCTTGACCGGTATATCCATCGGGATGCTCTCCAAAATCGAGAACGGC
AACACCTCGCCATCGCTGACGACGCTTCAAACGCTGGCACACGCCCTTTCCGTGCCGCTGACCAGCTTCTTCCGACGCTT
TGAGGAAAGCCGGGTCGCTGTACACACCCGCGCCGGCGAAGGCGTTGAAATTGATCGCGAAGGCACCCGCGCTAACCACC
AGTATAACCTGCTGGGACATATCGGCTCGAATGCGTCCGGCGTTATTGTCGAACCCTACCTGATCACGCTCACGGCCGAA
TCTGACGTTTTTCCCACGTTCATGCATGGCGGGATTGAGACCATTTACATGCTGGAAGGCCAGGTTGACTATCGTCACGG
TGACGATGTGCACCCTCTCAAACCGGGGGATACGCTTTTCTTCGATGCGGATGCCCCTCACGGCCCGGAAAAGCTGATCA
AACTACCGGCGCGCTATCTGGCCATCATCAGTTACCCGCAGAACAAGTAG

Upstream 100 bases:

>100_bases
CGATACGACCACTGGGTTTGTTTACCCGTGATAGTAGTTTTTGCAATCACAGGAAAATTATGGCTAGTCTGGTGCAGGGC
CCATTCGTCTGAAAGACACC

Downstream 100 bases:

>100_bases
GCACCGCGCGGGCCGGATGATCCATTCTGCCGCGTGGCCTTGAGGGATACCGCTGGTAACGTCGGGCATCAATCTGGCGT
CACGGCGCGCCGGACACACG

Product: DNA-binding protein

Products: NA

Alternate protein names: Transcriptional Regulator XRE Family; XRE Family Transcriptional Regulator; Cupin 2 Conserved Barrel Domain Protein; Helix-Turn-Helix Domain-Containing Protein; Cupin 2 Domain-Containing Protein; MerR Family Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator XRE Family With Cupin Sensor; HTH-Type Transcriptional Regulator; Transcriptional Regulator Merr Family; Helix-Turn-Helix Domain Protein; Transcriptional Regulator MerR Family; Transcriptional Regulator-Like Protein; Cupin Domain Protein; Epoxidase; Helix-Turn-Helix/Cupin Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Cro/CI Family Transcriptional Regulator; Xre Family xin-Antitoxin System Antitoxin Component; Transcriptional Regulator Cro/CI Family

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MCRDKRESASAVNIEKTSHDMAVKLAQNPHSIREGEREKVLEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENG
NTSPSLTTLQTLAHALSVPLTSFFRRFEESRVAVHTRAGEGVEIDREGTRANHQYNLLGHIGSNASGVIVEPYLITLTAE
SDVFPTFMHGGIETIYMLEGQVDYRHGDDVHPLKPGDTLFFDADAPHGPEKLIKLPARYLAIISYPQNK

Sequences:

>Translated_229_residues
MCRDKRESASAVNIEKTSHDMAVKLAQNPHSIREGEREKVLEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENG
NTSPSLTTLQTLAHALSVPLTSFFRRFEESRVAVHTRAGEGVEIDREGTRANHQYNLLGHIGSNASGVIVEPYLITLTAE
SDVFPTFMHGGIETIYMLEGQVDYRHGDDVHPLKPGDTLFFDADAPHGPEKLIKLPARYLAIISYPQNK
>Mature_229_residues
MCRDKRESASAVNIEKTSHDMAVKLAQNPHSIREGEREKVLEVAIGREVRGHRKQHGITVAELSALTGISIGMLSKIENG
NTSPSLTTLQTLAHALSVPLTSFFRRFEESRVAVHTRAGEGVEIDREGTRANHQYNLLGHIGSNASGVIVEPYLITLTAE
SDVFPTFMHGGIETIYMLEGQVDYRHGDDVHPLKPGDTLFFDADAPHGPEKLIKLPARYLAIISYPQNK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25245; Mature: 25245

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCRDKRESASAVNIEKTSHDMAVKLAQNPHSIREGEREKVLEVAIGREVRGHRKQHGITV
CCCCCCCCCCEEEEECCCCCEEEEECCCCCHHHCCHHHHHHHHHHCCHHHCCHHHHCEEH
AELSALTGISIGMLSKIENGNTSPSLTTLQTLAHALSVPLTSFFRRFEESRVAVHTRAGE
HHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEECCCC
GVEIDREGTRANHQYNLLGHIGSNASGVIVEPYLITLTAESDVFPTFMHGGIETIYMLEG
CEEECCCCCCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHCCCEEEEEEEC
QVDYRHGDDVHPLKPGDTLFFDADAPHGPEKLIKLPARYLAIISYPQNK
EEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCHHHEEEEECCCCC
>Mature Secondary Structure
MCRDKRESASAVNIEKTSHDMAVKLAQNPHSIREGEREKVLEVAIGREVRGHRKQHGITV
CCCCCCCCCCEEEEECCCCCEEEEECCCCCHHHCCHHHHHHHHHHCCHHHCCHHHHCEEH
AELSALTGISIGMLSKIENGNTSPSLTTLQTLAHALSVPLTSFFRRFEESRVAVHTRAGE
HHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCEEEEEECCCC
GVEIDREGTRANHQYNLLGHIGSNASGVIVEPYLITLTAESDVFPTFMHGGIETIYMLEG
CEEECCCCCCCCCEEEEEEECCCCCCCEEECCEEEEEEECCCCCHHHHHCCCEEEEEEEC
QVDYRHGDDVHPLKPGDTLFFDADAPHGPEKLIKLPARYLAIISYPQNK
EEECCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHCHHHEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA