Click here to switch to the map view.

The map label for this gene is 110680980

Identifier: 110680980

GI number: 110680980

Start: 3708889

End: 3710160

Strand: Direct

Name: 110680980

Synonym: RD1_3838

Alternate gene names: NA

Gene position: 3708889-3710160 (Clockwise)

Preceding gene: 110680979

Following gene: 110680981

Centisome position: 89.74

GC content: 56.92

Gene sequence:

>1272_bases
GTGACAGCCCGCCACCGGACGAATAGCGTATCGGACGCTTTGGGCGCGCTGAGCTGGCGCGTCTATGTCTTTGCCATTCT
GCTGAGCTTTTTCGTTGTGGTTGAACCTGCACCAACCGATCTGGTGTTCATGATCGCGGTGGCGATCTTTTGCTTCTCGC
GCCCCGTCACGACCAATTTCCTCAGCGGATCGGCACTGTTGGGCATCTACCTGTACCTCGCTTTCTCGGTTTTATCGCTC
GTTTTTGTAGAATTCGTTTTCATGTTCGCCTTGCGGGCCGTTGCAATCGAATTTTACATGATCGGGCTTTTTGCGATGAC
CGCCTACTTCGTGAAAACGCGGGGGGATGCGGCCTTTGCCACTATTCTGGGCGCAATGGCGATTGGCGGTGTGCTTGCCT
CCTTTGTGACGCTTGTGGCCCTGTTCGACCTCATCCCCAACAGCGAAATCCTGTTTCGCGGTGAAGGCGCGCGAAACAGG
GTGAAGGCGACGTTCAAGGATCCAAACGTATTTGGCCCCTTCCTGGTGCCGGGCTTTCTGTTCCTGACCTGGGTGGTGGT
GGAATCGCCGCGCTTTCGTCTTTGGGCGCTCGGGGCCATGGGTCTTGTGACCATATCCCTGATCGCGACTTTCTCACGCG
GTGCATGGGTCCATGCATTCATCTCACTGTCGGTCTTCAGCCTTGCCCTGCTGGTCTATCGCCCCACGGCGCGGGCCACA
TTCACGGCCATTGTGTGGTTCGCGATTATCGTCTGCTGCGTCATATTGCTGTTTCTGGATCAGATCACGGCGCGCCTTGC
GGATTCCTTTTTCGCGCAACGCCTGTCCCTGCAAACCTATGACACCTCGCGCTTTGGCTATGTCGCTGATGCCGCCCGCC
AAATCTGGGAGCACCCGCTGGGCATCGGACCGTTTCAGGCGCGCTATGTCTATGGATATCTGCCCCATAATACCTTTGTC
GCCTTTGCCATGCACAATGGTCTTTTTGCCTGTCTTGGGCTGATCCTGATCTATGGCTCGGCGATGGCCCGCTGCATCGT
GAAAGTCGTTGATCAACAGCCCGGCTGGACAAAATATGCACTGGTCTTTTCGGTTTTGCTCGGGCTTCTGGTGCTGATGC
AGGTTGTGGGCTCCATCCATTGGCGGCACATGTATCTGGTCTGTGGGCTGGCCTTCGGGACCTATACGACAAACACCCTG
TTGGTTGCCCCGAACCCGCTGCGCAGGCGCAAACGTGCTGCGCGTCGGCGAAACTGGCAACCTGCTGAATGA

Upstream 100 bases:

>100_bases
CACCTGACGCGCTGGCCTTTTTGAACGATAGGCATGCCGCCGAAATCGACCGGCTGGAAACCCTACTGGCGCGCGATCTG
TCCGCATGGCGAGGGCGTCC

Downstream 100 bases:

>100_bases
CCACGACCAAAATCAGGGCAAGTGAACCATGAAAAAACTCATGCTCGGCAGTGTTCTGTCTGCGGGTCTGAAAGTCGCAA
GCGCCGGGTTGACGTTCCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 423; Mature: 422

Protein sequence:

>423_residues
MTARHRTNSVSDALGALSWRVYVFAILLSFFVVVEPAPTDLVFMIAVAIFCFSRPVTTNFLSGSALLGIYLYLAFSVLSL
VFVEFVFMFALRAVAIEFYMIGLFAMTAYFVKTRGDAAFATILGAMAIGGVLASFVTLVALFDLIPNSEILFRGEGARNR
VKATFKDPNVFGPFLVPGFLFLTWVVVESPRFRLWALGAMGLVTISLIATFSRGAWVHAFISLSVFSLALLVYRPTARAT
FTAIVWFAIIVCCVILLFLDQITARLADSFFAQRLSLQTYDTSRFGYVADAARQIWEHPLGIGPFQARYVYGYLPHNTFV
AFAMHNGLFACLGLILIYGSAMARCIVKVVDQQPGWTKYALVFSVLLGLLVLMQVVGSIHWRHMYLVCGLAFGTYTTNTL
LVAPNPLRRRKRAARRRNWQPAE

Sequences:

>Translated_423_residues
MTARHRTNSVSDALGALSWRVYVFAILLSFFVVVEPAPTDLVFMIAVAIFCFSRPVTTNFLSGSALLGIYLYLAFSVLSL
VFVEFVFMFALRAVAIEFYMIGLFAMTAYFVKTRGDAAFATILGAMAIGGVLASFVTLVALFDLIPNSEILFRGEGARNR
VKATFKDPNVFGPFLVPGFLFLTWVVVESPRFRLWALGAMGLVTISLIATFSRGAWVHAFISLSVFSLALLVYRPTARAT
FTAIVWFAIIVCCVILLFLDQITARLADSFFAQRLSLQTYDTSRFGYVADAARQIWEHPLGIGPFQARYVYGYLPHNTFV
AFAMHNGLFACLGLILIYGSAMARCIVKVVDQQPGWTKYALVFSVLLGLLVLMQVVGSIHWRHMYLVCGLAFGTYTTNTL
LVAPNPLRRRKRAARRRNWQPAE
>Mature_422_residues
TARHRTNSVSDALGALSWRVYVFAILLSFFVVVEPAPTDLVFMIAVAIFCFSRPVTTNFLSGSALLGIYLYLAFSVLSLV
FVEFVFMFALRAVAIEFYMIGLFAMTAYFVKTRGDAAFATILGAMAIGGVLASFVTLVALFDLIPNSEILFRGEGARNRV
KATFKDPNVFGPFLVPGFLFLTWVVVESPRFRLWALGAMGLVTISLIATFSRGAWVHAFISLSVFSLALLVYRPTARATF
TAIVWFAIIVCCVILLFLDQITARLADSFFAQRLSLQTYDTSRFGYVADAARQIWEHPLGIGPFQARYVYGYLPHNTFVA
FAMHNGLFACLGLILIYGSAMARCIVKVVDQQPGWTKYALVFSVLLGLLVLMQVVGSIHWRHMYLVCGLAFGTYTTNTLL
VAPNPLRRRKRAARRRNWQPAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47109; Mature: 46978

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTARHRTNSVSDALGALSWRVYVFAILLSFFVVVEPAPTDLVFMIAVAIFCFSRPVTTNF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
LSGSALLGIYLYLAFSVLSLVFVEFVFMFALRAVAIEFYMIGLFAMTAYFVKTRGDAAFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TILGAMAIGGVLASFVTLVALFDLIPNSEILFRGEGARNRVKATFKDPNVFGPFLVPGFL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHH
FLTWVVVESPRFRLWALGAMGLVTISLIATFSRGAWVHAFISLSVFSLALLVYRPTARAT
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
FTAIVWFAIIVCCVILLFLDQITARLADSFFAQRLSLQTYDTSRFGYVADAARQIWEHPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
GIGPFQARYVYGYLPHNTFVAFAMHNGLFACLGLILIYGSAMARCIVKVVDQQPGWTKYA
CCCCCCCEEEEEECCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LVFSVLLGLLVLMQVVGSIHWRHMYLVCGLAFGTYTTNTLLVAPNPLRRRKRAARRRNWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC
PAE
CCC
>Mature Secondary Structure 
TARHRTNSVSDALGALSWRVYVFAILLSFFVVVEPAPTDLVFMIAVAIFCFSRPVTTNF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHH
LSGSALLGIYLYLAFSVLSLVFVEFVFMFALRAVAIEFYMIGLFAMTAYFVKTRGDAAFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TILGAMAIGGVLASFVTLVALFDLIPNSEILFRGEGARNRVKATFKDPNVFGPFLVPGFL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEECCCCCCCHHHHHHHH
FLTWVVVESPRFRLWALGAMGLVTISLIATFSRGAWVHAFISLSVFSLALLVYRPTARAT
HHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
FTAIVWFAIIVCCVILLFLDQITARLADSFFAQRLSLQTYDTSRFGYVADAARQIWEHPL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC
GIGPFQARYVYGYLPHNTFVAFAMHNGLFACLGLILIYGSAMARCIVKVVDQQPGWTKYA
CCCCCCCEEEEEECCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
LVFSVLLGLLVLMQVVGSIHWRHMYLVCGLAFGTYTTNTLLVAPNPLRRRKRAARRRNWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCC
PAE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA