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The map label for this gene is ureF

Identifier: 110680947

GI number: 110680947

Start: 3677167

End: 3677835

Strand: Direct

Name: ureF

Synonym: RD1_3804

Alternate gene names: 110680947

Gene position: 3677167-3677835 (Clockwise)

Preceding gene: 110680946

Following gene: 110680948

Centisome position: 88.97

GC content: 59.64

Gene sequence:

>669_bases
ATGACCATTCACACGAGCCGCATCATCATGAGCACTGACGCTTTCCTGACACTCACGCAGTGGCTTTCCCCCGGTTTCCC
GGTCGGGGCCTACGCCTATTCCCATGGTCTTGAACAGGTCATTGATTGTGGTGACATGCGCGATGCGAAGGCCCTGCAAG
ACTGGGTCGAGGACATTTTGGAACACGGAAGCGGGACGAGCGATGGCATTCTGCTGGCCGCGTCCTACAAAGCACTCCCG
GAAGACGTTAGCCGGATAGACGCCATTGCCCGTGCTTTTGCCAGCTCTGCCGAACGTGTGACAGAGACGGTGGATCAGGG
CGCGGCATTTGCAAAAGCGGTCGATGCCATCTGGGCCACCGACCTTGGACAGCTATGCTACCCCGTTGCGGTTGGGCGCG
CGGCCTGCGCGCAGGGCCTGCCACTGGATCTGACACTTGAAATCTACACCCATGCCTTTGCCGCGAACCTTGTGTCTGCT
GCGGTGCGTCTGGTGCCCCTGGGTCAGACCGAAGGACAGGCCGTGCTGGCGGCACTGGCGCCATTGATCCGGCAGGTGGC
CCGCCGGTGCCATGATGCAGGCATTGACGATCTGACCACCGCCTGCATGGCGCTTGATATTGCCGCCATGCATCATGAAA
CCCAATATTCAAAGGTATTTCGCACATGA

Upstream 100 bases:

>100_bases
ACGGTGGCCGAAATCGTTGAACCCTTTACACCCGAGGGAGGGGCCTACGGCCACGGGCGCACCCATGGCCATGACCACAG
CCACCAGCACGGCCCGGCCC

Downstream 100 bases:

>100_bases
ATGTTGCCCCCCCTCTTACGCTCAATGGACCCTTGCGCATTGGGATCGGCGGCCCCGTCGGCGCGGGCAAAACCACGCTC
ACCGCCGCTTTGGCCAAAGC

Product: urease accessory protein UreF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MTIHTSRIIMSTDAFLTLTQWLSPGFPVGAYAYSHGLEQVIDCGDMRDAKALQDWVEDILEHGSGTSDGILLAASYKALP
EDVSRIDAIARAFASSAERVTETVDQGAAFAKAVDAIWATDLGQLCYPVAVGRAACAQGLPLDLTLEIYTHAFAANLVSA
AVRLVPLGQTEGQAVLAALAPLIRQVARRCHDAGIDDLTTACMALDIAAMHHETQYSKVFRT

Sequences:

>Translated_222_residues
MTIHTSRIIMSTDAFLTLTQWLSPGFPVGAYAYSHGLEQVIDCGDMRDAKALQDWVEDILEHGSGTSDGILLAASYKALP
EDVSRIDAIARAFASSAERVTETVDQGAAFAKAVDAIWATDLGQLCYPVAVGRAACAQGLPLDLTLEIYTHAFAANLVSA
AVRLVPLGQTEGQAVLAALAPLIRQVARRCHDAGIDDLTTACMALDIAAMHHETQYSKVFRT
>Mature_221_residues
TIHTSRIIMSTDAFLTLTQWLSPGFPVGAYAYSHGLEQVIDCGDMRDAKALQDWVEDILEHGSGTSDGILLAASYKALPE
DVSRIDAIARAFASSAERVTETVDQGAAFAKAVDAIWATDLGQLCYPVAVGRAACAQGLPLDLTLEIYTHAFAANLVSAA
VRLVPLGQTEGQAVLAALAPLIRQVARRCHDAGIDDLTTACMALDIAAMHHETQYSKVFRT

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0830

COG function: function code O; Urease accessory protein UreF

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureF family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): UREF_ROSDO (Q161S5)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_683954.1
- STRING:   Q161S5
- GeneID:   4198849
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_3804
- NMPDR:   fig|375451.6.peg.3534
- eggNOG:   COG0830
- HOGENOM:   HBG709295
- OMA:   WLSPAFP
- ProtClustDB:   CLSK759156
- BioCyc:   RDEN375451:RD1_3804-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01385
- InterPro:   IPR002639
- PIRSF:   PIRSF009467

Pfam domain/function: PF01730 UreF

EC number: NA

Molecular weight: Translated: 23718; Mature: 23587

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIHTSRIIMSTDAFLTLTQWLSPGFPVGAYAYSHGLEQVIDCGDMRDAKALQDWVEDIL
CCCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EHGSGTSDGILLAASYKALPEDVSRIDAIARAFASSAERVTETVDQGAAFAKAVDAIWAT
HCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLGQLCYPVAVGRAACAQGLPLDLTLEIYTHAFAANLVSAAVRLVPLGQTEGQAVLAALA
HHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
PLIRQVARRCHDAGIDDLTTACMALDIAAMHHETQYSKVFRT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TIHTSRIIMSTDAFLTLTQWLSPGFPVGAYAYSHGLEQVIDCGDMRDAKALQDWVEDIL
CCCCCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EHGSGTSDGILLAASYKALPEDVSRIDAIARAFASSAERVTETVDQGAAFAKAVDAIWAT
HCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLGQLCYPVAVGRAACAQGLPLDLTLEIYTHAFAANLVSAAVRLVPLGQTEGQAVLAALA
HHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
PLIRQVARRCHDAGIDDLTTACMALDIAAMHHETQYSKVFRT
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA