| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110680865
Identifier: 110680865
GI number: 110680865
Start: 3583836
End: 3584900
Strand: Direct
Name: 110680865
Synonym: RD1_3714
Alternate gene names: NA
Gene position: 3583836-3584900 (Clockwise)
Preceding gene: 110680864
Following gene: 110680876
Centisome position: 86.71
GC content: 57.09
Gene sequence:
>1065_bases ATGCCCAACATTCTGTCTGAACTGTCGCAGGTCACCTATCTGCACCGCATCATCATCGGCCTTGATCAGGCGGATGCTGC GCAATTTCGCCATGCAAAGCAGTTTTTCAAGGGCCTGAACCAGAACCATGTGGTGATCTGGAATGACAGCCCGCGTATGT TGGAACTTGGCGCGCGCCTTGATGCAATGGGCCTTGCCCCCGCAGAACAGGGCAAGGGCAAGAACGTCTGGTCGGCTCTT GGGTATCTGATCGCCTGTGCGGACAGCGCGGTGATGGCCATCCACGACTGCGATATCCTGACGTATAAGAACGAAATGCT GTCCCGCCTCGTTTACCCTGTAGCCAATCCGAATTTCCCCTATCAGGTCGCCAAGGGCTATTACCCGCGCATTGGCGGTG ACAAGATGAACGGGCGGGTAACGCGGCTGCTGGTCAGCCCGCTGTTGATCGCCTTGAAACGTGTGATCGGTGACAGGGAT TACATCGATTACCTGCGCAGTTTCCGCTATCCGCTGTCGGGCGAATTTGCCATGCGCACCGCGATCCTGCCGGATTTGCG CATCCCTTCAGACTGGGGGCTGGAGATTGGCGTGTTGTCCGAGGCCTGGCGCAACCTCGCCCCCAAAGCGGTGTGTCAGG TCGAGATTTCAGATGCTTACGACCACAAACATCAGACGCTGAGCACTGATGACGCCGATGCTGGCCTCAGCAGGATGTCC ACGGATATTTGCAAGGCGATCTTTCGCAAACTGGCCGCTGACGGGACGGTTTTCACCGCCAATACCTTTCGCGCGCTGAA AGCCACCTATTACCGCAGCGCACTGGACCTGCTGGAGGGCTATTACAACGACGCCAAAATGAATGGTCTGTCGCTTGACC GCCACGAAGAGGAAACCGCGATTGAACTGTTTGCCGAAAACATCATGCGCGCCGGTCAGGTTTTCATCGAAAACCCGCAT GAGACGCCCTTTATCCCGACGTGGAACCGGGTGCATTCGGCGGATCCGCGATTCCTGACCGATCTACGTGCGGCCGCCGC AGCGGATGAAGCAGAATACGAGTAA
Upstream 100 bases:
>100_bases CGCGCTTGCCGAGATGAATGACGAGTTGGTGACCTTTGCCCAGACGCGCAAAATTTCGTTGATCCTGCCTTGTCTCTATT CGGAACTTGAAGGCGACGCG
Downstream 100 bases:
>100_bases CGGGGGCCGCGAGGTCAGCCCGGTTGCGCCCGGTTGGTAATCCACCGGCATTGATAGGGGGCGAGTTCGATCGTATCCGC GAAGGTATCGATCTTTTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: Glycosyltransferase-Like Protein; Glycosyltransferase; Cell Wall Biogenesis Glycosyltransferase; Glycosyltransferase Family Protein; Family 2 Glycosyltransferase; Glucosyl-3-Phosphoglycerate Synthase; Glycosyltransferase Group; Cell Wall Biosynthesis Glycosyltransferase
Number of amino acids: Translated: 354; Mature: 353
Protein sequence:
>354_residues MPNILSELSQVTYLHRIIIGLDQADAAQFRHAKQFFKGLNQNHVVIWNDSPRMLELGARLDAMGLAPAEQGKGKNVWSAL GYLIACADSAVMAIHDCDILTYKNEMLSRLVYPVANPNFPYQVAKGYYPRIGGDKMNGRVTRLLVSPLLIALKRVIGDRD YIDYLRSFRYPLSGEFAMRTAILPDLRIPSDWGLEIGVLSEAWRNLAPKAVCQVEISDAYDHKHQTLSTDDADAGLSRMS TDICKAIFRKLAADGTVFTANTFRALKATYYRSALDLLEGYYNDAKMNGLSLDRHEEETAIELFAENIMRAGQVFIENPH ETPFIPTWNRVHSADPRFLTDLRAAAAADEAEYE
Sequences:
>Translated_354_residues MPNILSELSQVTYLHRIIIGLDQADAAQFRHAKQFFKGLNQNHVVIWNDSPRMLELGARLDAMGLAPAEQGKGKNVWSAL GYLIACADSAVMAIHDCDILTYKNEMLSRLVYPVANPNFPYQVAKGYYPRIGGDKMNGRVTRLLVSPLLIALKRVIGDRD YIDYLRSFRYPLSGEFAMRTAILPDLRIPSDWGLEIGVLSEAWRNLAPKAVCQVEISDAYDHKHQTLSTDDADAGLSRMS TDICKAIFRKLAADGTVFTANTFRALKATYYRSALDLLEGYYNDAKMNGLSLDRHEEETAIELFAENIMRAGQVFIENPH ETPFIPTWNRVHSADPRFLTDLRAAAAADEAEYE >Mature_353_residues PNILSELSQVTYLHRIIIGLDQADAAQFRHAKQFFKGLNQNHVVIWNDSPRMLELGARLDAMGLAPAEQGKGKNVWSALG YLIACADSAVMAIHDCDILTYKNEMLSRLVYPVANPNFPYQVAKGYYPRIGGDKMNGRVTRLLVSPLLIALKRVIGDRDY IDYLRSFRYPLSGEFAMRTAILPDLRIPSDWGLEIGVLSEAWRNLAPKAVCQVEISDAYDHKHQTLSTDDADAGLSRMST DICKAIFRKLAADGTVFTANTFRALKATYYRSALDLLEGYYNDAKMNGLSLDRHEEETAIELFAENIMRAGQVFIENPHE TPFIPTWNRVHSADPRFLTDLRAAAAADEAEYE
Specific function: Unknown
COG id: COG0463
COG function: function code M; Glycosyltransferases involved in cell wall biogenesis
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 39767; Mature: 39636
Theoretical pI: Translated: 6.05; Mature: 6.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNILSELSQVTYLHRIIIGLDQADAAQFRHAKQFFKGLNQNHVVIWNDSPRMLELGARL CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCH DAMGLAPAEQGKGKNVWSALGYLIACADSAVMAIHDCDILTYKNEMLSRLVYPVANPNFP HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHEEHHHHHHHHHHHHCCCCCCC YQVAKGYYPRIGGDKMNGRVTRLLVSPLLIALKRVIGDRDYIDYLRSFRYPLSGEFAMRT HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH AILPDLRIPSDWGLEIGVLSEAWRNLAPKAVCQVEISDAYDHKHQTLSTDDADAGLSRMS HHCCCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEEECHHHCCHHCCCCCCCHHHHHHHHH TDICKAIFRKLAADGTVFTANTFRALKATYYRSALDLLEGYYNDAKMNGLSLDRHEEETA HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHH IELFAENIMRAGQVFIENPHETPFIPTWNRVHSADPRFLTDLRAAAAADEAEYE HHHHHHHHHHHCHHEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PNILSELSQVTYLHRIIIGLDQADAAQFRHAKQFFKGLNQNHVVIWNDSPRMLELGARL CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCH DAMGLAPAEQGKGKNVWSALGYLIACADSAVMAIHDCDILTYKNEMLSRLVYPVANPNFP HHCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCHHEEHHHHHHHHHHHHCCCCCCC YQVAKGYYPRIGGDKMNGRVTRLLVSPLLIALKRVIGDRDYIDYLRSFRYPLSGEFAMRT HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHH AILPDLRIPSDWGLEIGVLSEAWRNLAPKAVCQVEISDAYDHKHQTLSTDDADAGLSRMS HHCCCCCCCCCCCCEEHHHHHHHHCCCCCCEEEEEECHHHCCHHCCCCCCCHHHHHHHHH TDICKAIFRKLAADGTVFTANTFRALKATYYRSALDLLEGYYNDAKMNGLSLDRHEEETA HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCHHHHH IELFAENIMRAGQVFIENPHETPFIPTWNRVHSADPRFLTDLRAAAAADEAEYE HHHHHHHHHHHCHHEEECCCCCCCCCCCHHHCCCCCHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA