Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 110680832

GI number: 110680832

Start: 3547018

End: 3548184

Strand: Direct

Name: yfdE [H]

Synonym: RD1_3680

Alternate gene names: 110680832

Gene position: 3547018-3548184 (Clockwise)

Preceding gene: 110680831

Following gene: 110680833

Centisome position: 85.82

GC content: 62.55

Gene sequence:

>1167_bases
ATGAAGCCATTGGACGGGATCAGGGTTCTGGACCTCACCCGCGTTCTTGCGGGGCCCTATTGCACGGCGTTGCTGGCCGA
TCTGGGGGCGGAAGTGATCAAACTGGAGCCGCCACGCGGGGATGATTATCGTCACATCGGACCATTCCTTGATGGTGACA
GCGCGCTGTTTTCGCTGAACAATCGCGGCAAGAAAAGCATCGCACTGAACCTGAAAGACCCCGAAGGGCTGGCGCTTGCG
CAGCAGATCGCCAGAGGCTGCGATGTGGTTGTCGAAAACTTCCGCCCCGGCGTGGCTGAAAAGATCGGGCTTGGTCCTGA
CACCTTGCGTGCGCAAAACACCGGGTTGATCTATGCACGCGTGTCGGGCTTTGGGCAGACAGGACCGTTCAGGGACCTGC
CCGCCTATGATCTGGTCGTACAGGCCATGTCCGGCCTGATGGCTGCCACCGGCGAAGAGGGCGGCGCGCCGCTCAAAACC
GGTGAATCGGTCGCTGATCTGATGGGCGGTCTGTTTGGCAGTTGGGCGATCCTTGCCGCACTCGTCAATCGTGGACGCAC
AGGACAAGGTGCCGTGCTGGACATCGCGATGTACGACGCGGTTTATTCTCTTTTGACCACCAGCCACGCGCTGCACTTTT
ATGCTGGCCAGACGCCGGAGCGGGTCGGCAACCGGCACCCGCTATCGACCCCTTTCGGATGCTTTGCCACGCGGGACGGT
CAGGTGGTGATCGCGGTGCTGACCCCGGCGCAATTCGCCCGACTGGCGGTCCTGATCGGGCAGCCTGATTTGCCGCAGGA
TGCACGCTTTGGCACCGATAGCCTGCGCACCAAGCACGAACCCGCGCTCAAGGCCTGCATCGAGGCGTGGAGCGCAAAAC
AAACGACAGAAGATGCCATGATCGCATTGGCCGAGGCGCAACTGCCCTCTGCCCCGATCTGGACCATCGCCGAGGCAAGC
ACGAGCGCACATGCAAAGGCGCGCACCCTCGTTCAGGACGGCGCGCGCCCACTAGTGGGGCAGCCCGTGTGGTTTGACGG
TGAAAAACCGATGGCCCAGACCCCCGCACCGGGTTTGAGCGCGGATGCGACCCGCATCCTGTCGGATTTCTGCGATGTGG
ACGCGGCGCGGCTGGCCCATCTGCGCGACAAGGGAGTGGTTCTATGA

Upstream 100 bases:

>100_bases
CCGCGCCCTGGACCTATGACGACAAACGTGCTGCGCGGCTGCGCCTTCATCTGGCGCAGATGTTGAACGGTCTAGCTAAC
CTCGCGCCGGAATTGCGGAC

Downstream 100 bases:

>100_bases
CCTTCATCTGGCATATGTTGAACGACGACGAGACCCTGTTTTGCGATGTGCTCGAACGGATCGTTGCGGACAAGATCGCG
CCCCTTGCAACGCAAACGGA

Product: CAIB/BAIF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MKPLDGIRVLDLTRVLAGPYCTALLADLGAEVIKLEPPRGDDYRHIGPFLDGDSALFSLNNRGKKSIALNLKDPEGLALA
QQIARGCDVVVENFRPGVAEKIGLGPDTLRAQNTGLIYARVSGFGQTGPFRDLPAYDLVVQAMSGLMAATGEEGGAPLKT
GESVADLMGGLFGSWAILAALVNRGRTGQGAVLDIAMYDAVYSLLTTSHALHFYAGQTPERVGNRHPLSTPFGCFATRDG
QVVIAVLTPAQFARLAVLIGQPDLPQDARFGTDSLRTKHEPALKACIEAWSAKQTTEDAMIALAEAQLPSAPIWTIAEAS
TSAHAKARTLVQDGARPLVGQPVWFDGEKPMAQTPAPGLSADATRILSDFCDVDAARLAHLRDKGVVL

Sequences:

>Translated_388_residues
MKPLDGIRVLDLTRVLAGPYCTALLADLGAEVIKLEPPRGDDYRHIGPFLDGDSALFSLNNRGKKSIALNLKDPEGLALA
QQIARGCDVVVENFRPGVAEKIGLGPDTLRAQNTGLIYARVSGFGQTGPFRDLPAYDLVVQAMSGLMAATGEEGGAPLKT
GESVADLMGGLFGSWAILAALVNRGRTGQGAVLDIAMYDAVYSLLTTSHALHFYAGQTPERVGNRHPLSTPFGCFATRDG
QVVIAVLTPAQFARLAVLIGQPDLPQDARFGTDSLRTKHEPALKACIEAWSAKQTTEDAMIALAEAQLPSAPIWTIAEAS
TSAHAKARTLVQDGARPLVGQPVWFDGEKPMAQTPAPGLSADATRILSDFCDVDAARLAHLRDKGVVL
>Mature_388_residues
MKPLDGIRVLDLTRVLAGPYCTALLADLGAEVIKLEPPRGDDYRHIGPFLDGDSALFSLNNRGKKSIALNLKDPEGLALA
QQIARGCDVVVENFRPGVAEKIGLGPDTLRAQNTGLIYARVSGFGQTGPFRDLPAYDLVVQAMSGLMAATGEEGGAPLKT
GESVADLMGGLFGSWAILAALVNRGRTGQGAVLDIAMYDAVYSLLTTSHALHFYAGQTPERVGNRHPLSTPFGCFATRDG
QVVIAVLTPAQFARLAVLIGQPDLPQDARFGTDSLRTKHEPALKACIEAWSAKQTTEDAMIALAEAQLPSAPIWTIAEAS
TSAHAKARTLVQDGARPLVGQPVWFDGEKPMAQTPAPGLSADATRILSDFCDVDAARLAHLRDKGVVL

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=395, Percent_Identity=33.9240506329114, Blast_Score=230, Evalue=2e-60,
Organism=Homo sapiens, GI300863124, Length=421, Percent_Identity=32.3040380047506, Blast_Score=219, Evalue=5e-57,
Organism=Homo sapiens, GI13376042, Length=421, Percent_Identity=29.4536817102138, Blast_Score=179, Evalue=3e-45,
Organism=Homo sapiens, GI300863126, Length=397, Percent_Identity=31.2342569269521, Blast_Score=178, Evalue=1e-44,
Organism=Homo sapiens, GI266456254, Length=333, Percent_Identity=30.9309309309309, Blast_Score=138, Evalue=7e-33,
Organism=Homo sapiens, GI42794625, Length=333, Percent_Identity=30.9309309309309, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI266458393, Length=259, Percent_Identity=35.1351351351351, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI266458397, Length=259, Percent_Identity=35.1351351351351, Blast_Score=136, Evalue=4e-32,
Organism=Homo sapiens, GI42822893, Length=142, Percent_Identity=40.8450704225352, Blast_Score=108, Evalue=9e-24,
Organism=Homo sapiens, GI266458395, Length=142, Percent_Identity=40.8450704225352, Blast_Score=107, Evalue=1e-23,
Organism=Escherichia coli, GI87082093, Length=347, Percent_Identity=40.0576368876081, Blast_Score=265, Evalue=4e-72,
Organism=Escherichia coli, GI1788717, Length=368, Percent_Identity=29.0760869565217, Blast_Score=143, Evalue=2e-35,
Organism=Escherichia coli, GI1786222, Length=338, Percent_Identity=26.6272189349112, Blast_Score=107, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=265, Percent_Identity=29.0566037735849, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=357, Percent_Identity=26.0504201680672, Blast_Score=104, Evalue=9e-23,
Organism=Drosophila melanogaster, GI24648431, Length=395, Percent_Identity=35.9493670886076, Blast_Score=229, Evalue=2e-60,
Organism=Drosophila melanogaster, GI24585488, Length=348, Percent_Identity=29.8850574712644, Blast_Score=129, Evalue=3e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41098; Mature: 41098

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLDGIRVLDLTRVLAGPYCTALLADLGAEVIKLEPPRGDDYRHIGPFLDGDSALFSLN
CCCCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEC
NRGKKSIALNLKDPEGLALAQQIARGCDVVVENFRPGVAEKIGLGPDTLRAQNTGLIYAR
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHCCCCCCEEEEE
VSGFGQTGPFRDLPAYDLVVQAMSGLMAATGEEGGAPLKTGESVADLMGGLFGSWAILAA
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVNRGRTGQGAVLDIAMYDAVYSLLTTSHALHFYAGQTPERVGNRHPLSTPFGCFATRDG
HHHCCCCCCCCEEHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCCCCEEECCC
QVVIAVLTPAQFARLAVLIGQPDLPQDARFGTDSLRTKHEPALKACIEAWSAKQTTEDAM
CEEEEEECCHHHHHEEHEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCHHHH
IALAEAQLPSAPIWTIAEASTSAHAKARTLVQDGARPLVGQPVWFDGEKPMAQTPAPGLS
HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCC
ADATRILSDFCDVDAARLAHLRDKGVVL
HHHHHHHHHHHCCHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKPLDGIRVLDLTRVLAGPYCTALLADLGAEVIKLEPPRGDDYRHIGPFLDGDSALFSLN
CCCCCCCHHHHHHHHHHCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEEEC
NRGKKSIALNLKDPEGLALAQQIARGCDVVVENFRPGVAEKIGLGPDTLRAQNTGLIYAR
CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHCCCCCCEEEEE
VSGFGQTGPFRDLPAYDLVVQAMSGLMAATGEEGGAPLKTGESVADLMGGLFGSWAILAA
ECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVNRGRTGQGAVLDIAMYDAVYSLLTTSHALHFYAGQTPERVGNRHPLSTPFGCFATRDG
HHHCCCCCCCCEEHHHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCCCCEEECCC
QVVIAVLTPAQFARLAVLIGQPDLPQDARFGTDSLRTKHEPALKACIEAWSAKQTTEDAM
CEEEEEECCHHHHHEEHEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCCCHHHH
IALAEAQLPSAPIWTIAEASTSAHAKARTLVQDGARPLVGQPVWFDGEKPMAQTPAPGLS
HHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCC
ADATRILSDFCDVDAARLAHLRDKGVVL
HHHHHHHHHHHCCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]