| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is purE [H]
Identifier: 110680671
GI number: 110680671
Start: 3373658
End: 3374146
Strand: Direct
Name: purE [H]
Synonym: RD1_3510
Alternate gene names: 110680671
Gene position: 3373658-3374146 (Clockwise)
Preceding gene: 110680668
Following gene: 110680672
Centisome position: 81.63
GC content: 62.58
Gene sequence:
>489_bases ATGACACCTCCCTCTGTCGGAATAATCATGGGCAGCCAGTCGGATTGGCCAACCCTGCGTGAGGCCGCACTGGTGCTGGA TGATCTTGGCGTTGCGTATGAAAAACGTATCGTTTCGGCCCATCGCACACCGGATCGGCTCTGGGACTATGGCGTCACCG CCGTGGACCGGGGCTTGCAGGTGATCATCGCCGGTGCCGGGGGCGCGGCCCATCTGCCCGGCATGATGGCATCAAAAACG CGCGTGCCGGTCATCGGGGTCCCTGTGCAGACACAGGCCCTGTCCGGTGTTGATTCGCTTTATTCGATCCTGCAGATGCC GCGCGGCTATCCGGTCGCGACAATGGCAATCGGGGCCGCCGGTGCCAAGAACGCCGGGCTGATGGCCGCAGGAATCCTTG CGCTCAACGATGCCGACCTTGCGGCACGTCTGGACGCATGGCGCGCTGCACTTTCTGCCTCCATCCCTGAGGAACCCGTT GATGAATGA
Upstream 100 bases:
>100_bases CCCGGATATCATCGCCTGAGGCATGCCCGGTGCATTGCGCACCCCATCCGTTTGATTATAGTCCGGATTTAGAAATATCA GGCGCAAGGGGCCCTTTTCA
Downstream 100 bases:
>100_bases ACCCTTGAAGACCGGATCCACCATCGGGATCCTGGGTGGCGGGCAGCTGGGCCGGATGCTGGCCGTGGCGGCGGCCCGTC TTGGCCTCAAGACACATGTC
Product: phosphoribosylaminoimidazole carboxylase, catalytic subunit
Products: NA
Alternate protein names: N5-CAIR mutase; 5-(carboxyamino)imidazole ribonucleotide mutase [H]
Number of amino acids: Translated: 162; Mature: 161
Protein sequence:
>162_residues MTPPSVGIIMGSQSDWPTLREAALVLDDLGVAYEKRIVSAHRTPDRLWDYGVTAVDRGLQVIIAGAGGAAHLPGMMASKT RVPVIGVPVQTQALSGVDSLYSILQMPRGYPVATMAIGAAGAKNAGLMAAGILALNDADLAARLDAWRAALSASIPEEPV DE
Sequences:
>Translated_162_residues MTPPSVGIIMGSQSDWPTLREAALVLDDLGVAYEKRIVSAHRTPDRLWDYGVTAVDRGLQVIIAGAGGAAHLPGMMASKT RVPVIGVPVQTQALSGVDSLYSILQMPRGYPVATMAIGAAGAKNAGLMAAGILALNDADLAARLDAWRAALSASIPEEPV DE >Mature_161_residues TPPSVGIIMGSQSDWPTLREAALVLDDLGVAYEKRIVSAHRTPDRLWDYGVTAVDRGLQVIIAGAGGAAHLPGMMASKTR VPVIGVPVQTQALSGVDSLYSILQMPRGYPVATMAIGAAGAKNAGLMAAGILALNDADLAARLDAWRAALSASIPEEPVD E
Specific function: Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR) [H]
COG id: COG0041
COG function: function code F; Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AIR carboxylase family [H]
Homologues:
Organism=Escherichia coli, GI1786734, Length=158, Percent_Identity=59.4936708860759, Blast_Score=162, Evalue=1e-41, Organism=Saccharomyces cerevisiae, GI6324702, Length=147, Percent_Identity=54.421768707483, Blast_Score=156, Evalue=2e-39,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000031 [H]
Pfam domain/function: PF00731 AIRC [H]
EC number: =5.4.99.18 [H]
Molecular weight: Translated: 16802; Mature: 16670
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPPSVGIIMGSQSDWPTLREAALVLDDLGVAYEKRIVSAHRTPDRLWDYGVTAVDRGLQ CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCEE VIIAGAGGAAHLPGMMASKTRVPVIGVPVQTQALSGVDSLYSILQMPRGYPVATMAIGAA EEEECCCCHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHEEECCC GAKNAGLMAAGILALNDADLAARLDAWRAALSASIPEEPVDE CCCCCCCEEHHEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure TPPSVGIIMGSQSDWPTLREAALVLDDLGVAYEKRIVSAHRTPDRLWDYGVTAVDRGLQ CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHCCEE VIIAGAGGAAHLPGMMASKTRVPVIGVPVQTQALSGVDSLYSILQMPRGYPVATMAIGAA EEEECCCCHHHCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCHHEEECCC GAKNAGLMAAGILALNDADLAARLDAWRAALSASIPEEPVDE CCCCCCCEEHHEEEECCCHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3036807; 9384377 [H]