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The map label for this gene is ycfH [C]

Identifier: 110680632

GI number: 110680632

Start: 3338255

End: 3339061

Strand: Direct

Name: ycfH [C]

Synonym: RD1_3468

Alternate gene names: 110680632

Gene position: 3338255-3339061 (Clockwise)

Preceding gene: 110680631

Following gene: 110680633

Centisome position: 80.77

GC content: 60.1

Gene sequence:

>807_bases
ATGAGCACGCAACCACATATCACCGACAGTCACTGCCACCTCGATTTCCCTGATTTCGAGGGACGTATCGACGAGGTTGT
GGCCAATGCCGCAGAGGCTGGCGTCATGCGCATGGTGACGATCTGTACCAAACTCAGGAACGAGCCCGCCGTGCGCGCCA
TCGCCGAGGCACATGCGCCGATCTTCTATGCCGCCGGAACGCATCCGATGAGTGCGGCAAGCGAACCGCTGGCGAGCGTC
GAGCAACTGATCACCCTTGCCAAGCATCCGAAATTCGTGGGGATCGGCGAAACCGGGCTGGATTACCACTATACCGCCGA
GAGTGCGCAGGTGCAGAAAACCTCGCTCCGCATTCACATTGATGCCGCACGGGAAACCGGCTTGCCGCTGATCATCCACG
CGCGTGATGCCGATGAGGATATGGCCCGCATCCTGCGCGAGGCCTATGATCAGGGTGCCTATACCTGCGTGATGCATTGC
TTTTCATCCTCTGCCGCGTTGGCCAGAGTCGCGCTTGATATGGGGTTCTATCTGTCGATGTCGGGCATCACGGCCTTTCC
CAAGTCGCAGGCCCTGCGGGATATTTTTGCCGCCGCCCCGATCGATCGTATTCTGGTGGAAACCGACGCGCCCTATCTGG
CCCCCCCACCCCACCGGGGCAAACGCAACGAACCGGCTTACACCGCCCATACCGCGCGGCGCGCTGCTGAGACCTTTGGG
ATGGACTACAGCGAATTTGCAGCGCAACTTGAGTTGAATTTCGACCGGCTGTTTGCCAAAGCCGCAGCCTATGAGCTTGC
CGCGTGA

Upstream 100 bases:

>100_bases
GAACCTTGACCCTGCGGCTCTGGTCCTAGATACCCTCATCAAGATCAGCCAAACACGTGTGGCCTAGCACACGATGCGCG
GCGGCAGTATTGAGCAGACC

Downstream 100 bases:

>100_bases
TGGATCAAATGGAGTTCACCATATTGGGGTGCGGTTCTTCCGGCGGTGTGCCACGTCTGGGCGGCCTTTGGGGCGATTGT
GACCGGCATAACGCAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 267

Protein sequence:

>268_residues
MSTQPHITDSHCHLDFPDFEGRIDEVVANAAEAGVMRMVTICTKLRNEPAVRAIAEAHAPIFYAAGTHPMSAASEPLASV
EQLITLAKHPKFVGIGETGLDYHYTAESAQVQKTSLRIHIDAARETGLPLIIHARDADEDMARILREAYDQGAYTCVMHC
FSSSAALARVALDMGFYLSMSGITAFPKSQALRDIFAAAPIDRILVETDAPYLAPPPHRGKRNEPAYTAHTARRAAETFG
MDYSEFAAQLELNFDRLFAKAAAYELAA

Sequences:

>Translated_268_residues
MSTQPHITDSHCHLDFPDFEGRIDEVVANAAEAGVMRMVTICTKLRNEPAVRAIAEAHAPIFYAAGTHPMSAASEPLASV
EQLITLAKHPKFVGIGETGLDYHYTAESAQVQKTSLRIHIDAARETGLPLIIHARDADEDMARILREAYDQGAYTCVMHC
FSSSAALARVALDMGFYLSMSGITAFPKSQALRDIFAAAPIDRILVETDAPYLAPPPHRGKRNEPAYTAHTARRAAETFG
MDYSEFAAQLELNFDRLFAKAAAYELAA
>Mature_267_residues
STQPHITDSHCHLDFPDFEGRIDEVVANAAEAGVMRMVTICTKLRNEPAVRAIAEAHAPIFYAAGTHPMSAASEPLASVE
QLITLAKHPKFVGIGETGLDYHYTAESAQVQKTSLRIHIDAARETGLPLIIHARDADEDMARILREAYDQGAYTCVMHCF
SSSAALARVALDMGFYLSMSGITAFPKSQALRDIFAAAPIDRILVETDAPYLAPPPHRGKRNEPAYTAHTARRAAETFGM
DYSEFAAQLELNFDRLFAKAAAYELAA

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI225903424, Length=213, Percent_Identity=30.9859154929577, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI226061853, Length=275, Percent_Identity=26.9090909090909, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI110349730, Length=267, Percent_Identity=25.8426966292135, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI110349734, Length=267, Percent_Identity=26.2172284644195, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI226061614, Length=256, Percent_Identity=26.171875, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI14042943, Length=201, Percent_Identity=22.8855721393035, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=26.9565217391304, Blast_Score=72, Evalue=4e-13,
Organism=Escherichia coli, GI1787342, Length=257, Percent_Identity=41.2451361867704, Blast_Score=179, Evalue=2e-46,
Organism=Escherichia coli, GI48994985, Length=245, Percent_Identity=31.4285714285714, Blast_Score=127, Evalue=1e-30,
Organism=Escherichia coli, GI87082439, Length=225, Percent_Identity=32.4444444444444, Blast_Score=117, Evalue=1e-27,
Organism=Caenorhabditis elegans, GI17559024, Length=215, Percent_Identity=30.2325581395349, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI71980746, Length=267, Percent_Identity=25.4681647940075, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17565396, Length=237, Percent_Identity=31.2236286919831, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17543026, Length=288, Percent_Identity=27.0833333333333, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI24648690, Length=235, Percent_Identity=29.3617021276596, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24586117, Length=211, Percent_Identity=27.4881516587678, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI221330018, Length=211, Percent_Identity=27.4881516587678, Blast_Score=73, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29280; Mature: 29149

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS01090 TATD_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQPHITDSHCHLDFPDFEGRIDEVVANAAEAGVMRMVTICTKLRNEPAVRAIAEAHAP
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
IFYAAGTHPMSAASEPLASVEQLITLAKHPKFVGIGETGLDYHYTAESAQVQKTSLRIHI
EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCEEEEEEEEEEE
DAARETGLPLIIHARDADEDMARILREAYDQGAYTCVMHCFSSSAALARVALDMGFYLSM
EEHHHCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHEEEE
SGITAFPKSQALRDIFAAAPIDRILVETDAPYLAPPPHRGKRNEPAYTAHTARRAAETFG
CCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
MDYSEFAAQLELNFDRLFAKAAAYELAA
CCHHHHHHHHHCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STQPHITDSHCHLDFPDFEGRIDEVVANAAEAGVMRMVTICTKLRNEPAVRAIAEAHAP
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
IFYAAGTHPMSAASEPLASVEQLITLAKHPKFVGIGETGLDYHYTAESAQVQKTSLRIHI
EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEEECCCCEEEEEEEEEEE
DAARETGLPLIIHARDADEDMARILREAYDQGAYTCVMHCFSSSAALARVALDMGFYLSM
EEHHHCCCEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHEEEE
SGITAFPKSQALRDIFAAAPIDRILVETDAPYLAPPPHRGKRNEPAYTAHTARRAAETFG
CCCCCCCHHHHHHHHHHHCCHHHEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
MDYSEFAAQLELNFDRLFAKAAAYELAA
CCHHHHHHHHHCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]