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The map label for this gene is tnpA

Identifier: 110680613

GI number: 110680613

Start: 3309369

End: 3310757

Strand: Direct

Name: tnpA

Synonym: RD1_3444

Alternate gene names: NA

Gene position: 3309369-3310757 (Clockwise)

Preceding gene: 110680609

Following gene: 110680614

Centisome position: 80.07

GC content: 55.22

Gene sequence:

>1389_bases
ATGATGGGTGTTCAAGAAGCTCCGGCGCGGTTGTTTTACGACTTTGATTTGGAGGCACACGTCCCTGCCAATCACATATT
GCAGGAGGTTGATCGGTTTCTGGACATGGGGACGGTGCGTCATCAGCTTGCGCCGCACTACAGCCATCTGGGGCGCCCTT
CGATTGACCCGGAACTGATCGTGCGGATGTTGGTGATCGGCTATGTTCTGGGCATCCGATCTGAGAGACGTCTGTGTGAT
GAAGTGCATCTAAACCTGGCTTATCGATGGTTTTGTCATCTTGGCATCGATGGCAAAGTTCCGGATCACAGCACCTTTTC
AAGATATCGCCATGGTAAATTCCGCGACAGCGACCTGCTTCGGTCAGTGTTCGAAGCCACTGTTGCGCGCTGCATTTCCG
AAGGCCTTGTTGGCGGCCATGGCTTTGCAGTCGATGCCAGTTTGATTGAGGCCGATGTCGATAGAATGAACTCCACTGCG
CAGTCGGAATGGGATGCATCTGCCATCGATCCAGATGACGCGCCACGGGCCGTCAGGGAATATCTCGACGTTCTCGACGA
TAAGGCCTTTGGCGCATCCACACCGGTCAAACCAAAGTTCACGTCCCACTCCGATCCGGCCAGCCAATGGACTGCAGCAC
GCAAAGGTCCGGCGATCTTTTGTTATTCGAACAACTATCTGATCGACACCGAACATTCTGTGATTGTGGACGTTGAAGCG
ACACGTTCCGTCAGGCAGGCCGAAGTCGGTGCCGCCCAAACTATGATTGATCGCACGGAAGAGCGTTTCAGCATCACACC
GGACTGGCTTGTAGCGGACACGGCCTATGGATCAGCAGAGAATCTGGCGTGGCTGACAAAGAAGCGCAACATCATTCCGT
TCATCCCACTGATCGACAAATCAGAGCGAACAGATGGCACGTTCTCCCGTTCAGACTTCGACTGGGACGAAGAGAATGAC
CGCTATACCTGCCCTGAAGGCCAGCACCTGTTGCAGTCCCGCCGGAACTACTCTGACCTGCGCAGGAAAGAACCAAAAAC
CGGGCGGCGCAGATACCGCGCCACCAAAGCCGTTTGCGATGCCTGCCCGTCGAAACCAAAATGCTGCCCAAACACAAACA
CCCGCTTCATTGGCCGCGAGGAACATGAGGGCGCGCGTGACTTTGCCCGACTGGCTGCCAAGTCTCCCTTTAACCCCAAG
GCTCAGGCCAAACGCAAGAAGGTCGAAATGCTCTTCGCTCATCTTAAACGCATTCTCGGGCTGGGCCGGCTCCGGCTTCG
AGGACCCTGCGGTGTGAGGGACGAGTTTACGCTCGCAGCGATCGCCCAGAACCTTCGAAAACTTGCAAAACTAAGACCCA
AGATCGCCGAAACAAGGATCGCGATATGA

Upstream 100 bases:

>100_bases
AAAACCGGTACAAGGGGCGTGTTTTGTTGAAGAAGTCTCTGTTGCTTTGGAGCAAGTCATTTGATTCACTCGTTATTGCA
GGATGAGGAGGGATTTGACG

Downstream 100 bases:

>100_bases
TCTGAACCGGCAAAACGACAGCCCAACAGGCCGCCCAGTACAACGGGCGGAACAATAAGCCCGCGACCGCCCCTGCAAGG
CCGCCAACCTCCCAAGTCAC

Product: transposase, putative

Products: NA

Alternate protein names: Transposase IS4 Family Protein; ISBma2 Transposase; Transposase IS4 Family; ISPsy22 Transposase Truncated; IS4 Family Transposase; IS5 Family Transposase N-Terminal Domain Protein; Transposase Is4 Family Protein; Transposase And Inactivated Derivative; ISGsu3 Transposase; Transposase-Related Protein; ISMca1 Transposase; Transposase Mutator Type; IS5 Family Transposase N-Terminal Domain; Phage-Associated Cell Wall Hydrolase; Transposase Truncated; ISGsu2 Transposase; ISPsy6 Transposase; IS4 Transposase; Transposase For IS; Transposase For Insertion Sequence NGRIS-8b; ISPpu20 Transposase; ISSag8 Transposase; Transposase Fragment

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MMGVQEAPARLFYDFDLEAHVPANHILQEVDRFLDMGTVRHQLAPHYSHLGRPSIDPELIVRMLVIGYVLGIRSERRLCD
EVHLNLAYRWFCHLGIDGKVPDHSTFSRYRHGKFRDSDLLRSVFEATVARCISEGLVGGHGFAVDASLIEADVDRMNSTA
QSEWDASAIDPDDAPRAVREYLDVLDDKAFGASTPVKPKFTSHSDPASQWTAARKGPAIFCYSNNYLIDTEHSVIVDVEA
TRSVRQAEVGAAQTMIDRTEERFSITPDWLVADTAYGSAENLAWLTKKRNIIPFIPLIDKSERTDGTFSRSDFDWDEEND
RYTCPEGQHLLQSRRNYSDLRRKEPKTGRRRYRATKAVCDACPSKPKCCPNTNTRFIGREEHEGARDFARLAAKSPFNPK
AQAKRKKVEMLFAHLKRILGLGRLRLRGPCGVRDEFTLAAIAQNLRKLAKLRPKIAETRIAI

Sequences:

>Translated_462_residues
MMGVQEAPARLFYDFDLEAHVPANHILQEVDRFLDMGTVRHQLAPHYSHLGRPSIDPELIVRMLVIGYVLGIRSERRLCD
EVHLNLAYRWFCHLGIDGKVPDHSTFSRYRHGKFRDSDLLRSVFEATVARCISEGLVGGHGFAVDASLIEADVDRMNSTA
QSEWDASAIDPDDAPRAVREYLDVLDDKAFGASTPVKPKFTSHSDPASQWTAARKGPAIFCYSNNYLIDTEHSVIVDVEA
TRSVRQAEVGAAQTMIDRTEERFSITPDWLVADTAYGSAENLAWLTKKRNIIPFIPLIDKSERTDGTFSRSDFDWDEEND
RYTCPEGQHLLQSRRNYSDLRRKEPKTGRRRYRATKAVCDACPSKPKCCPNTNTRFIGREEHEGARDFARLAAKSPFNPK
AQAKRKKVEMLFAHLKRILGLGRLRLRGPCGVRDEFTLAAIAQNLRKLAKLRPKIAETRIAI
>Mature_462_residues
MMGVQEAPARLFYDFDLEAHVPANHILQEVDRFLDMGTVRHQLAPHYSHLGRPSIDPELIVRMLVIGYVLGIRSERRLCD
EVHLNLAYRWFCHLGIDGKVPDHSTFSRYRHGKFRDSDLLRSVFEATVARCISEGLVGGHGFAVDASLIEADVDRMNSTA
QSEWDASAIDPDDAPRAVREYLDVLDDKAFGASTPVKPKFTSHSDPASQWTAARKGPAIFCYSNNYLIDTEHSVIVDVEA
TRSVRQAEVGAAQTMIDRTEERFSITPDWLVADTAYGSAENLAWLTKKRNIIPFIPLIDKSERTDGTFSRSDFDWDEEND
RYTCPEGQHLLQSRRNYSDLRRKEPKTGRRRYRATKAVCDACPSKPKCCPNTNTRFIGREEHEGARDFARLAAKSPFNPK
AQAKRKKVEMLFAHLKRILGLGRLRLRGPCGVRDEFTLAAIAQNLRKLAKLRPKIAETRIAI

Specific function: Unknown

COG id: COG3666

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52368; Mature: 52368

Theoretical pI: Translated: 8.54; Mature: 8.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMGVQEAPARLFYDFDLEAHVPANHILQEVDRFLDMGTVRHQLAPHYSHLGRPSIDPELI
CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCHHHH
VRMLVIGYVLGIRSERRLCDEVHLNLAYRWFCHLGIDGKVPDHSTFSRYRHGKFRDSDLL
HHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHCCCCCCHHHH
RSVFEATVARCISEGLVGGHGFAVDASLIEADVDRMNSTAQSEWDASAIDPDDAPRAVRE
HHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHH
YLDVLDDKAFGASTPVKPKFTSHSDPASQWTAARKGPAIFCYSNNYLIDTEHSVIVDVEA
HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCEEEECCCCEEEEEHH
TRSVRQAEVGAAQTMIDRTEERFSITPDWLVADTAYGSAENLAWLTKKRNIIPFIPLIDK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCEECCCCC
SERTDGTFSRSDFDWDEENDRYTCPEGQHLLQSRRNYSDLRRKEPKTGRRRYRATKAVCD
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHH
ACPSKPKCCPNTNTRFIGREEHEGARDFARLAAKSPFNPKAQAKRKKVEMLFAHLKRILG
HCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
LGRLRLRGPCGVRDEFTLAAIAQNLRKLAKLRPKIAETRIAI
CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCC
>Mature Secondary Structure
MMGVQEAPARLFYDFDLEAHVPANHILQEVDRFLDMGTVRHQLAPHYSHLGRPSIDPELI
CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCCCHHHH
VRMLVIGYVLGIRSERRLCDEVHLNLAYRWFCHLGIDGKVPDHSTFSRYRHGKFRDSDLL
HHHHHHHHHHHCCHHHHHHHHHHHHHEEEEEEEECCCCCCCCCHHHHHHHCCCCCCHHHH
RSVFEATVARCISEGLVGGHGFAVDASLIEADVDRMNSTAQSEWDASAIDPDDAPRAVRE
HHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHHHH
YLDVLDDKAFGASTPVKPKFTSHSDPASQWTAARKGPAIFCYSNNYLIDTEHSVIVDVEA
HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCEEEECCCCEEEEEHH
TRSVRQAEVGAAQTMIDRTEERFSITPDWLVADTAYGSAENLAWLTKKRNIIPFIPLIDK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCCCEECCCCC
SERTDGTFSRSDFDWDEENDRYTCPEGQHLLQSRRNYSDLRRKEPKTGRRRYRATKAVCD
CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHHHHH
ACPSKPKCCPNTNTRFIGREEHEGARDFARLAAKSPFNPKAQAKRKKVEMLFAHLKRILG
HCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC
LGRLRLRGPCGVRDEFTLAAIAQNLRKLAKLRPKIAETRIAI
CCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA