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The map label for this gene is yrbE [C]

Identifier: 110680422

GI number: 110680422

Start: 3110198

End: 3110971

Strand: Direct

Name: yrbE [C]

Synonym: RD1_3241

Alternate gene names: 110680422

Gene position: 3110198-3110971 (Clockwise)

Preceding gene: 110680421

Following gene: 110680423

Centisome position: 75.25

GC content: 61.24

Gene sequence:

>774_bases
GTGAAGTTTTTCGCCGTCATAGGCCGCGTTGTCCTGAGCGCATTGGCAGCCATTGGCCGGATCGCCATTTTTGGCGGCCA
GACGATCGGCCATCTTGCCCGACCGCCCTTTTACGCCCGCGAGTTTGCGACACAACTGCTCAATATCGGTTGGCTGTCCC
TGCCGGTCGTCGGGTTGACGGCGGTGTTCACCGGGGGTGCGCTCGCCTTGCAGATCTACGCAGGCGGCTCGCGGTTCAAT
GCCGAAGCCGTGGTGCCCCAGATCGTTGCCGTCGGGATGGTGCGCGAACTGGGCCCTGTGCTGGTCGGCTTGATGATTGC
CGCGCGGGTGACGTCCTCCATCGCCGCCGAAATCGCGACCATGAAGGTGACAGAGCAGATTGACGCGCTCGTCACCCTGT
CCACCCATCCGATGAAATACCTCACCGTGCCGCGCGTCCTTGCCGCCGTGCTGGTGGTGCCGTTGCTCGTGGCTGTCGGG
GATATCATCGGCATCTTCGGCGGTTTTGCGGTTGCCACCGGAACGCTCGGGTTCAATGCGGCAACCTACATCAACAACAC
GGTGAATTTTCTTGAACCGCTGGACGTTATTTCATCGCTGACCAAAGGGGCGGTCTTTGGCTTTTGCGCCGCTCTCATGG
GGTGTTATCACGGCATGAACTCAGGCCGTGGTGCCATGGGGGTCGGTCGCGCCACGAAGGGCGCTGTTGAAGGTGCCGCC
GTTCTCATTCTGGCCGCGAACTTCGTGCTGACGGGGGTATTTTTCACGCTATGA

Upstream 100 bases:

>100_bases
GGCGTCACCAGTCAGTCGATACGGTTGCGGGCTTTGCAGATACCATCGGATATGAAATACTGACCTCTCTCGGCGACAGA
TACAAAAGGGTCTATACGCA

Downstream 100 bases:

>100_bases
TCCGGATGGAAGGCGTACATAAATCCTTTGGCTCAAACCACGTGCTGCGCGGGATCGACCTGAATATCGAAAAAGGGTCG
TCCATGGTCATCATCGGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKFFAVIGRVVLSALAAIGRIAIFGGQTIGHLARPPFYAREFATQLLNIGWLSLPVVGLTAVFTGGALALQIYAGGSRFN
AEAVVPQIVAVGMVRELGPVLVGLMIAARVTSSIAAEIATMKVTEQIDALVTLSTHPMKYLTVPRVLAAVLVVPLLVAVG
DIIGIFGGFAVATGTLGFNAATYINNTVNFLEPLDVISSLTKGAVFGFCAALMGCYHGMNSGRGAMGVGRATKGAVEGAA
VLILAANFVLTGVFFTL

Sequences:

>Translated_257_residues
MKFFAVIGRVVLSALAAIGRIAIFGGQTIGHLARPPFYAREFATQLLNIGWLSLPVVGLTAVFTGGALALQIYAGGSRFN
AEAVVPQIVAVGMVRELGPVLVGLMIAARVTSSIAAEIATMKVTEQIDALVTLSTHPMKYLTVPRVLAAVLVVPLLVAVG
DIIGIFGGFAVATGTLGFNAATYINNTVNFLEPLDVISSLTKGAVFGFCAALMGCYHGMNSGRGAMGVGRATKGAVEGAA
VLILAANFVLTGVFFTL
>Mature_257_residues
MKFFAVIGRVVLSALAAIGRIAIFGGQTIGHLARPPFYAREFATQLLNIGWLSLPVVGLTAVFTGGALALQIYAGGSRFN
AEAVVPQIVAVGMVRELGPVLVGLMIAARVTSSIAAEIATMKVTEQIDALVTLSTHPMKYLTVPRVLAAVLVVPLLVAVG
DIIGIFGGFAVATGTLGFNAATYINNTVNFLEPLDVISSLTKGAVFGFCAALMGCYHGMNSGRGAMGVGRATKGAVEGAA
VLILAANFVLTGVFFTL

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=260, Percent_Identity=30, Blast_Score=119, Evalue=3e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 26486; Mature: 26486

Theoretical pI: Translated: 9.80; Mature: 9.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFFAVIGRVVLSALAAIGRIAIFGGQTIGHLARPPFYAREFATQLLNIGWLSLPVVGLT
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
AVFTGGALALQIYAGGSRFNAEAVVPQIVAVGMVRELGPVLVGLMIAARVTSSIAAEIAT
HHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKVTEQIDALVTLSTHPMKYLTVPRVLAAVLVVPLLVAVGDIIGIFGGFAVATGTLGFNA
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ATYINNTVNFLEPLDVISSLTKGAVFGFCAALMGCYHGMNSGRGAMGVGRATKGAVEGAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
VLILAANFVLTGVFFTL
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKFFAVIGRVVLSALAAIGRIAIFGGQTIGHLARPPFYAREFATQLLNIGWLSLPVVGLT
CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
AVFTGGALALQIYAGGSRFNAEAVVPQIVAVGMVRELGPVLVGLMIAARVTSSIAAEIAT
HHHCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKVTEQIDALVTLSTHPMKYLTVPRVLAAVLVVPLLVAVGDIIGIFGGFAVATGTLGFNA
HHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
ATYINNTVNFLEPLDVISSLTKGAVFGFCAALMGCYHGMNSGRGAMGVGRATKGAVEGAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
VLILAANFVLTGVFFTL
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA