Click here to switch to the map view.

The map label for this gene is yciR [C]

Identifier: 110680389

GI number: 110680389

Start: 3072052

End: 3074097

Strand: Direct

Name: yciR [C]

Synonym: RD1_3207

Alternate gene names: 110680389

Gene position: 3072052-3074097 (Clockwise)

Preceding gene: 110680388

Following gene: 110680391

Centisome position: 74.33

GC content: 57.09

Gene sequence:

>2046_bases
ATGCGCCGTGCATTGCATCGGTTCTGCATCAGCAGCCCTCAGGCGCTGTGGCAGCGCTATATTCTTGGCTTTCTGTTTAT
TTTTGCCACGATTTCCGTGTCGCACTGGGCCACGCTCGCCACCATAAAGGCGGCTGAAGACGATGCCGAGGTGCTTTCTG
TCAGCAGCCGACAGCAGATGATGAGCCAACGCATCATGTTCCTTCTGACAGAAGCAAAACACGGCCACACGGCCAACATC
GAAACCAGTCTCGAAGATGCGCTGGATGTGTTTGAAACGTCGCATAACGCCTTGGTTTCGCGCGATGACCTGTCCCCGGA
GCTGCAAGCGCTCTACTTCGATAAGCAGCCGATTTCACTGGATGCTTTCTCCCGCCGCTTTGTGCAATTGGTCGGGATTG
CCGCGAGTGCAGAGGGCGAAGAGGCCGAAGAACTGCACGCGGTTCTGACCCGTTGGGGCACCCATGAATTGCTGGTATCC
CTCGCAACCGCATCCGATTTGTTCAGGCAAAGTTCCGAAGCACGGATCAAACGGCTCCATTTCATTCAGAAAACCGCACT
TATTGCGGCCCTGACCGTGTTGTTCATCGAAGCGCTTTTGATTTTCCTGCCGGCGCAATTGTCGGTCAACCGGGCGATTC
ACCGCCTTGAGCGCAGCAAGCGTCGGCTCAAATCCTCCATGGAAGTGCTGCGCAACAGGAATACGGAGCTGATCAGCGCC
CGTCAGGAATTGATGCGCGCGGCAAACCATGACGCCCTTACCGGGCTGTTCAACCGTCGCGCGGTTTACGAACACCTGAG
CGCGCCCGGCCCTTCAACGCAAGGCGGTGATTTCACCCGATGCATCATCAAGATGGACCTCGATCTCTTCAAAGAAGTGA
ATGACAGTCTTGGACATCATGCAGGTGATCGCGTTCTGGTGCATGTGGCCAGAATCCTCAAGGACGTGTCCCGCCCCGGC
GATTTCGTCGGGCGTATTGGTGGCGACGAATTCGTGATCCTCATCGACAACCCGAAGGATCTGAAGATGATCCAGGACCT
GTGCCAACAGATCATCAGCGCCGTGGGCAAACCGATCACCCTAGATAGGGTCCAGACGAAAATCGGCGCCAGCATCGGCT
TCACAATTGCCGCCTCATCAGATGCGACGCCGGACCAGTTGCTGATAGAAGCGGACCTCGCCCTTTATGAAGCCAAACGC
GGCGGACGCAGCCGGGCCTGCGCCTATTCAAACGCATTGGCAGAAGAAATCGAGACGCGCCGAATTCTATTCAATGAGAT
TAACGCCGCGTTGGAGGGGGATCAGTTCGAACCCTATTTCCAGCCTCAGGTGTATACGGAAACAGGTGAAATCTATGGGT
GCGAAGTGCTTGCGCGCTGGCGTCATCCCGAACGCGGCATTGTCCCGCCCGCTACATTTATCGCCGCCGCCGAAGAAGCG
GGCATGATCCACCAGATTGATCAGATCATGGTTGAAAAAGGGCTCGACGCGCTTGAAGTGTTCAGGGAAATGGGCGTGCA
CGTACCGGCGATTTCTGTCAATGCATCGCCGCCCACGCTGCGTGACCCGCATCTGACGGACCGCCTCTTGCAGGCCGTGC
GCGCACGGCATCTTCCCCCCAGCGTTCTTACGGTCGAGGTGCTGGAGAGCACATTGATTGAAAACGATGACGACATGGCG
CTGCTCACGATCGAGAATCTGTCCAAGGCCGGGTTTTCGGTGGTGCTGGATGATTTTGGCACCGGCTATGCTTCGATGTC
GAACCTGTCGCGGTTGCGCCTCGATGGGATCAAGCTTGACCAGTCCCTGGTTTTGCCCGTGCCCGAGCCCAGGGCCGACA
GCATTATCTCTGCGCTGGTCACATTGTCGAGCAATCTGAACATGAGAGTGGTCGCGGAAGGGGTCGAAACCCCTGCCCAT
TTCAAAACCGTCCGGCGACTGGGCTGCGATGTGGTTCAGGGGTTCGGGATCGGCAGGCCCATGCCTAAAGAGGCGTTCAT
CCAATGGTACAATACCTACGGCGCGCAGCAGATCCGGACCGGTTGA

Upstream 100 bases:

>100_bases
TGCGCTGTGCAGGTTCCGGTCTGCACGGCTCGAACGGTCGAACGTCCTCGGCCTGCATCGCCAAGTGGATCGCGCACCTA
TGGGAGCACTCAAAAAACGC

Downstream 100 bases:

>100_bases
CGGGCAAACCGAGCCTCACCTGATGGCGAGGACCGCCGATACCGGGGCCATTGCAACGGTCGATGCGCGGTCTTGCAGCG
TCCATTTCATCAGAGCGGCG

Product: GGDEF/EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 681; Mature: 681

Protein sequence:

>681_residues
MRRALHRFCISSPQALWQRYILGFLFIFATISVSHWATLATIKAAEDDAEVLSVSSRQQMMSQRIMFLLTEAKHGHTANI
ETSLEDALDVFETSHNALVSRDDLSPELQALYFDKQPISLDAFSRRFVQLVGIAASAEGEEAEELHAVLTRWGTHELLVS
LATASDLFRQSSEARIKRLHFIQKTALIAALTVLFIEALLIFLPAQLSVNRAIHRLERSKRRLKSSMEVLRNRNTELISA
RQELMRAANHDALTGLFNRRAVYEHLSAPGPSTQGGDFTRCIIKMDLDLFKEVNDSLGHHAGDRVLVHVARILKDVSRPG
DFVGRIGGDEFVILIDNPKDLKMIQDLCQQIISAVGKPITLDRVQTKIGASIGFTIAASSDATPDQLLIEADLALYEAKR
GGRSRACAYSNALAEEIETRRILFNEINAALEGDQFEPYFQPQVYTETGEIYGCEVLARWRHPERGIVPPATFIAAAEEA
GMIHQIDQIMVEKGLDALEVFREMGVHVPAISVNASPPTLRDPHLTDRLLQAVRARHLPPSVLTVEVLESTLIENDDDMA
LLTIENLSKAGFSVVLDDFGTGYASMSNLSRLRLDGIKLDQSLVLPVPEPRADSIISALVTLSSNLNMRVVAEGVETPAH
FKTVRRLGCDVVQGFGIGRPMPKEAFIQWYNTYGAQQIRTG

Sequences:

>Translated_681_residues
MRRALHRFCISSPQALWQRYILGFLFIFATISVSHWATLATIKAAEDDAEVLSVSSRQQMMSQRIMFLLTEAKHGHTANI
ETSLEDALDVFETSHNALVSRDDLSPELQALYFDKQPISLDAFSRRFVQLVGIAASAEGEEAEELHAVLTRWGTHELLVS
LATASDLFRQSSEARIKRLHFIQKTALIAALTVLFIEALLIFLPAQLSVNRAIHRLERSKRRLKSSMEVLRNRNTELISA
RQELMRAANHDALTGLFNRRAVYEHLSAPGPSTQGGDFTRCIIKMDLDLFKEVNDSLGHHAGDRVLVHVARILKDVSRPG
DFVGRIGGDEFVILIDNPKDLKMIQDLCQQIISAVGKPITLDRVQTKIGASIGFTIAASSDATPDQLLIEADLALYEAKR
GGRSRACAYSNALAEEIETRRILFNEINAALEGDQFEPYFQPQVYTETGEIYGCEVLARWRHPERGIVPPATFIAAAEEA
GMIHQIDQIMVEKGLDALEVFREMGVHVPAISVNASPPTLRDPHLTDRLLQAVRARHLPPSVLTVEVLESTLIENDDDMA
LLTIENLSKAGFSVVLDDFGTGYASMSNLSRLRLDGIKLDQSLVLPVPEPRADSIISALVTLSSNLNMRVVAEGVETPAH
FKTVRRLGCDVVQGFGIGRPMPKEAFIQWYNTYGAQQIRTG
>Mature_681_residues
MRRALHRFCISSPQALWQRYILGFLFIFATISVSHWATLATIKAAEDDAEVLSVSSRQQMMSQRIMFLLTEAKHGHTANI
ETSLEDALDVFETSHNALVSRDDLSPELQALYFDKQPISLDAFSRRFVQLVGIAASAEGEEAEELHAVLTRWGTHELLVS
LATASDLFRQSSEARIKRLHFIQKTALIAALTVLFIEALLIFLPAQLSVNRAIHRLERSKRRLKSSMEVLRNRNTELISA
RQELMRAANHDALTGLFNRRAVYEHLSAPGPSTQGGDFTRCIIKMDLDLFKEVNDSLGHHAGDRVLVHVARILKDVSRPG
DFVGRIGGDEFVILIDNPKDLKMIQDLCQQIISAVGKPITLDRVQTKIGASIGFTIAASSDATPDQLLIEADLALYEAKR
GGRSRACAYSNALAEEIETRRILFNEINAALEGDQFEPYFQPQVYTETGEIYGCEVLARWRHPERGIVPPATFIAAAEEA
GMIHQIDQIMVEKGLDALEVFREMGVHVPAISVNASPPTLRDPHLTDRLLQAVRARHLPPSVLTVEVLESTLIENDDDMA
LLTIENLSKAGFSVVLDDFGTGYASMSNLSRLRLDGIKLDQSLVLPVPEPRADSIISALVTLSSNLNMRVVAEGVETPAH
FKTVRRLGCDVVQGFGIGRPMPKEAFIQWYNTYGAQQIRTG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=443, Percent_Identity=32.9571106094808, Blast_Score=245, Evalue=9e-66,
Organism=Escherichia coli, GI87081921, Length=434, Percent_Identity=31.5668202764977, Blast_Score=228, Evalue=1e-60,
Organism=Escherichia coli, GI226510982, Length=369, Percent_Identity=29.2682926829268, Blast_Score=155, Evalue=7e-39,
Organism=Escherichia coli, GI1788502, Length=249, Percent_Identity=32.9317269076305, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1790496, Length=262, Percent_Identity=30.1526717557252, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1787055, Length=258, Percent_Identity=30.2325581395349, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1786507, Length=251, Percent_Identity=30.6772908366534, Blast_Score=115, Evalue=1e-26,
Organism=Escherichia coli, GI87082096, Length=442, Percent_Identity=26.2443438914027, Blast_Score=113, Evalue=4e-26,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=31.5789473684211, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87081845, Length=236, Percent_Identity=31.7796610169492, Blast_Score=112, Evalue=1e-25,
Organism=Escherichia coli, GI1788381, Length=446, Percent_Identity=24.4394618834081, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=27.7551020408163, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=29.2490118577075, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87081881, Length=180, Percent_Identity=37.7777777777778, Blast_Score=96, Evalue=6e-21,
Organism=Escherichia coli, GI1787262, Length=186, Percent_Identity=32.258064516129, Blast_Score=96, Evalue=9e-21,
Organism=Escherichia coli, GI87082007, Length=198, Percent_Identity=35.3535353535354, Blast_Score=96, Evalue=1e-20,
Organism=Escherichia coli, GI87081977, Length=176, Percent_Identity=32.9545454545455, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI145693134, Length=197, Percent_Identity=32.48730964467, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787410, Length=147, Percent_Identity=36.734693877551, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=30.3370786516854, Blast_Score=80, Evalue=5e-16,
Organism=Escherichia coli, GI1788956, Length=188, Percent_Identity=30.3191489361702, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1786584, Length=173, Percent_Identity=30.635838150289, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=28.2208588957055, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI87081974, Length=166, Percent_Identity=29.5180722891566, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI87082280, Length=234, Percent_Identity=29.0598290598291, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=30.8641975308642, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75629; Mature: 75629

Theoretical pI: Translated: 6.10; Mature: 6.10

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRALHRFCISSPQALWQRYILGFLFIFATISVSHWATLATIKAAEDDAEVLSVSSRQQM
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHH
MSQRIMFLLTEAKHGHTANIETSLEDALDVFETSHNALVSRDDLSPELQALYFDKQPISL
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHEEECCCCCCH
DAFSRRFVQLVGIAASAEGEEAEELHAVLTRWGTHELLVSLATASDLFRQSSEARIKRLH
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
FIQKTALIAALTVLFIEALLIFLPAQLSVNRAIHRLERSKRRLKSSMEVLRNRNTELISA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RQELMRAANHDALTGLFNRRAVYEHLSAPGPSTQGGDFTRCIIKMDLDLFKEVNDSLGHH
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
AGDRVLVHVARILKDVSRPGDFVGRIGGDEFVILIDNPKDLKMIQDLCQQIISAVGKPIT
CCHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEE
LDRVQTKIGASIGFTIAASSDATPDQLLIEADLALYEAKRGGRSRACAYSNALAEEIETR
HHHHHHHHCCCCCEEEEECCCCCCHHEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RILFNEINAALEGDQFEPYFQPQVYTETGEIYGCEVLARWRHPERGIVPPATFIAAAEEA
HHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEHHHHHHCCCCCCCCCCCHHHHHHHHHC
GMIHQIDQIMVEKGLDALEVFREMGVHVPAISVNASPPTLRDPHLTDRLLQAVRARHLPP
CHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
SVLTVEVLESTLIENDDDMALLTIENLSKAGFSVVLDDFGTGYASMSNLSRLRLDGIKLD
CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEC
QSLVLPVPEPRADSIISALVTLSSNLNMRVVAEGVETPAHFKTVRRLGCDVVQGFGIGRP
CEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC
MPKEAFIQWYNTYGAQQIRTG
CCHHHHHHHHHHCCCHHHCCC
>Mature Secondary Structure
MRRALHRFCISSPQALWQRYILGFLFIFATISVSHWATLATIKAAEDDAEVLSVSSRQQM
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHH
MSQRIMFLLTEAKHGHTANIETSLEDALDVFETSHNALVSRDDLSPELQALYFDKQPISL
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCHHHEEECCCCCCH
DAFSRRFVQLVGIAASAEGEEAEELHAVLTRWGTHELLVSLATASDLFRQSSEARIKRLH
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHH
FIQKTALIAALTVLFIEALLIFLPAQLSVNRAIHRLERSKRRLKSSMEVLRNRNTELISA
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
RQELMRAANHDALTGLFNRRAVYEHLSAPGPSTQGGDFTRCIIKMDLDLFKEVNDSLGHH
HHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
AGDRVLVHVARILKDVSRPGDFVGRIGGDEFVILIDNPKDLKMIQDLCQQIISAVGKPIT
CCHHHHHHHHHHHHHHCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCEE
LDRVQTKIGASIGFTIAASSDATPDQLLIEADLALYEAKRGGRSRACAYSNALAEEIETR
HHHHHHHHCCCCCEEEEECCCCCCHHEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
RILFNEINAALEGDQFEPYFQPQVYTETGEIYGCEVLARWRHPERGIVPPATFIAAAEEA
HHHHHHHHHHHCCCCCCCCCCCEEEECCCCEEEHHHHHHCCCCCCCCCCCHHHHHHHHHC
GMIHQIDQIMVEKGLDALEVFREMGVHVPAISVNASPPTLRDPHLTDRLLQAVRARHLPP
CHHHHHHHHHHHHCCHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
SVLTVEVLESTLIENDDDMALLTIENLSKAGFSVVLDDFGTGYASMSNLSRLRLDGIKLD
CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEC
QSLVLPVPEPRADSIISALVTLSSNLNMRVVAEGVETPAHFKTVRRLGCDVVQGFGIGRP
CEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC
MPKEAFIQWYNTYGAQQIRTG
CCHHHHHHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]