| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is fur [H]
Identifier: 110680327
GI number: 110680327
Start: 3015936
End: 3016349
Strand: Direct
Name: fur [H]
Synonym: RD1_3140
Alternate gene names: 110680327
Gene position: 3015936-3016349 (Clockwise)
Preceding gene: 110680326
Following gene: 110680328
Centisome position: 72.97
GC content: 57.49
Gene sequence:
>414_bases ATGAGCAAACCAATCATCAAACGCTGCGAGGCGAAGGGGCTGCGCATGACCGGCCAGAGGCGTGTCATCGCGCAGGTCCT CGAAGACAGCGCGGATCACCCGGATGTCGAGGAGCTTTATGCGCGTGCCGTGACCATCGACGGCGGCATTTCCATCGCGA CGGTGTACCGAACGGTCAAGCTTTTCGAGGAAGCGGGCATTCTGGACAAGCTCGAATTCGGCGACGGGCGCGCGCGCTAC GAGGACGCCGAACGCGACCATCATGATCATCTGATTGATATGAATTCAGGCGAGGTTATTGAATTCGTAGACGCCGAAAT CGAAGCCTTGCAGGAGCGGATCGCCAACAAGCTGGGATATGAGTTACGCGGGCACCGTCTGGAACTCTATGGTGTGCCGC TGAAAAAAGAGTGA
Upstream 100 bases:
>100_bases GCGCCTTGCTGGTGCAGAAGTCAACCGAAACACAAAAACTTGGCTGGAACCCCTGCGCAAAGGCGGCTAAAAACTCGGCC TACGTCACGGGGGCCATCGC
Downstream 100 bases:
>100_bases TGCAAGCGCGCGGCGTGGACATCTGCAACGGCGCGGCCTAAGGGACTGGCATCCCTTTTGGCAGGAAAACCCCCGATGGA TAATTTGCGCGGCGCGGCCC
Product: ferric uptake regulation protein, putative
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MSKPIIKRCEAKGLRMTGQRRVIAQVLEDSADHPDVEELYARAVTIDGGISIATVYRTVKLFEEAGILDKLEFGDGRARY EDAERDHHDHLIDMNSGEVIEFVDAEIEALQERIANKLGYELRGHRLELYGVPLKKE
Sequences:
>Translated_137_residues MSKPIIKRCEAKGLRMTGQRRVIAQVLEDSADHPDVEELYARAVTIDGGISIATVYRTVKLFEEAGILDKLEFGDGRARY EDAERDHHDHLIDMNSGEVIEFVDAEIEALQERIANKLGYELRGHRLELYGVPLKKE >Mature_136_residues SKPIIKRCEAKGLRMTGQRRVIAQVLEDSADHPDVEELYARAVTIDGGISIATVYRTVKLFEEAGILDKLEFGDGRARYE DAERDHHDHLIDMNSGEVIEFVDAEIEALQERIANKLGYELRGHRLELYGVPLKKE
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
Organism=Escherichia coli, GI1786899, Length=120, Percent_Identity=42.5, Blast_Score=92, Evalue=2e-20,
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 - InterPro: IPR011991 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 15564; Mature: 15433
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKPIIKRCEAKGLRMTGQRRVIAQVLEDSADHPDVEELYARAVTIDGGISIATVYRTVK CCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH LFEEAGILDKLEFGDGRARYEDAERDHHDHLIDMNSGEVIEFVDAEIEALQERIANKLGY HHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHCH ELRGHRLELYGVPLKKE HHCCCEEEEECCCCCCC >Mature Secondary Structure SKPIIKRCEAKGLRMTGQRRVIAQVLEDSADHPDVEELYARAVTIDGGISIATVYRTVK CCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHH LFEEAGILDKLEFGDGRARYEDAERDHHDHLIDMNSGEVIEFVDAEIEALQERIANKLGY HHHHCCCCCEECCCCCCCCCCCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHHCH ELRGHRLELYGVPLKKE HHCCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9835040 [H]