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The map label for this gene is 110680285

Identifier: 110680285

GI number: 110680285

Start: 2972800

End: 2973789

Strand: Reverse

Name: 110680285

Synonym: RD1_3096

Alternate gene names: NA

Gene position: 2973789-2972800 (Counterclockwise)

Preceding gene: 110680286

Following gene: 110680284

Centisome position: 71.95

GC content: 59.8

Gene sequence:

>990_bases
ATGAAAAAACTGATGATATCCGCGGCCTTTGCGGCCGGTCTGGGATCGGCGGCCCATGCCGATGATGCCAATTCGGTGAC
ACTGCAATTGCAGTGGGTCACGCAGGCGCAGTTTGCGGGATACTATGTGGCGCTGGACAAGGGCTTTTACGAAGAAGAGG
GGCTGGATGTGACAATCCTGCCGGGGGGGCCGGATATTGCTCCCCCGCAGGTTCTGGCGGGCGGTGGCGCGGATGTGATG
CTCAACTGGATGCCATCGGCGCTGGCCGCGCGCGAAAAGGGCCTGCCGGTGGTGAACATCGCGCAGCCGTTCAAGTCTTC
GGGTCTGATGCTGACCTGCTGGAAGGACACAGGCATCACCTCTGTTGAGGATTTCCGGGGCAAGACCATCGGCGTTTGGT
TCTTTGGCAATGAATATCCGTTCCTGAGCTGGATGTCGCAGGCGGGCATTCCCACGGACGGGGGCGAGGACGGTGTAACG
GTGCTGAAACAGGGGTTCAATGTGGACCCGTTGTTGCAGCGCGAGGCCGATTGCATCTCCACCATGACCTACAACGAATA
TGGTCAGGTGCTGGATGCGGGCGTCTCACCGGATGAGCTTGTGACCTTCAAATACGAAGATCAGGGCGTCGCCACGCTCG
AAGACGGCATCTATGCGCTTGAAGAGAACCTGAGCGATCCGGTCTTTCAGGACAAGATGGTCCGCTTCGTGCGCGCCTCC
ATGAAGGGCTGGGAATATGCCGGGGCCAACCCGGAAGAGGCCGCAGGCATCGTGCTCGACAATGATGAAACCGGCGCACA
GACCGAGGCGCATCAGGTGCGCATGATGGGGGAGATCGCCAAGCTGATCGAAGGTTCGGACGGATCGCTGGATGTGGCCG
ATTACGAACGCACGGTGGCGACTCTGCTGGCGGGTGGCTCTGATCCTGTGATCTCCAAAGCACCTGAAGGGGCGTGGACC
AGCGCCATCACAGATGCTGCGCTGAAATAA

Upstream 100 bases:

>100_bases
CTGATCGCCCTCATGGAGAAGCGGGTGACCTTCTGGCACCCGTCACAACGATAAAGCGGGCGAAAGACCCGCTTTCAATA
CTGACAAGGAGATATGGAAG

Downstream 100 bases:

>100_bases
GCCTGACAAACACCCGGTCGTGCGGCGCTTCGTTGATCCGCGCGGCCATGATGTCCCCGCTGGCATGTCTGCGGGGGCTT
GGCGATCGTGGGACCGTTTT

Product: ABC transporter, periplasmic

Products: NA

Alternate protein names: NMT1/THI5-Like Domain-Containing Protein; Diguanylate Cyclase; Histidine Kinase; NMT1/THI5 Like Domain-Containing Protein; Twin-Arginine Translocation Pathway Signal; ABC Transporter Periplasmic; GGDEF Domain-Containing Protein; NMT1/THI5-Like Protein; NMT1/THI5 Like Family; Thiamine Biosynthesis Protein; NLPA Lipoprotein; PAS Sensor Protein; Membrane Lipoprotein Lipid Attachment Site; Sensory Box Histidine Kinase; Secreted Protein; PAS/PAC Sensor Hybrid Histidine Kinase; Two Domain Sensory Box Histidine Kinase; Signal Transduction Protein; Nitrate/Sulfonate/Bicarbonate ABC Transporter; Nitrate/Sulfonate ABC Transporter; Diguanylate Cyclase Domain Protein; Diguanylate Cyclase/Phosphodiesterase; Sensory Transduction Histidine Kinase; PAS/PAC Sensor-Containg Diguanylate Cyclase; Diguanylate Cyclase With PAS/PAC Sensor; NMT1/THI5-Ike Domain-Containing Protein; Pyrimidine Biosynthesis; Pyrimidine Biosynthesis ; Signal Transduction Response Regulator; PAS/PAC Sensor Signal Transduction Histidine Kinase; Two-Component Sensor Histidine Kinase; ABC Transporter; Periplasmic-Component Of ABC Transporter; Diguanylate Cyclase With Extracellular Sensor; PasGgdef; Two-Component Sensor Protein; PAS/PAC Sensor-Containing Diguanylate Cyclase; Multi-Sensor Signal Transduction Histidine Kinase

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MKKLMISAAFAAGLGSAAHADDANSVTLQLQWVTQAQFAGYYVALDKGFYEEEGLDVTILPGGPDIAPPQVLAGGGADVM
LNWMPSALAAREKGLPVVNIAQPFKSSGLMLTCWKDTGITSVEDFRGKTIGVWFFGNEYPFLSWMSQAGIPTDGGEDGVT
VLKQGFNVDPLLQREADCISTMTYNEYGQVLDAGVSPDELVTFKYEDQGVATLEDGIYALEENLSDPVFQDKMVRFVRAS
MKGWEYAGANPEEAAGIVLDNDETGAQTEAHQVRMMGEIAKLIEGSDGSLDVADYERTVATLLAGGSDPVISKAPEGAWT
SAITDAALK

Sequences:

>Translated_329_residues
MKKLMISAAFAAGLGSAAHADDANSVTLQLQWVTQAQFAGYYVALDKGFYEEEGLDVTILPGGPDIAPPQVLAGGGADVM
LNWMPSALAAREKGLPVVNIAQPFKSSGLMLTCWKDTGITSVEDFRGKTIGVWFFGNEYPFLSWMSQAGIPTDGGEDGVT
VLKQGFNVDPLLQREADCISTMTYNEYGQVLDAGVSPDELVTFKYEDQGVATLEDGIYALEENLSDPVFQDKMVRFVRAS
MKGWEYAGANPEEAAGIVLDNDETGAQTEAHQVRMMGEIAKLIEGSDGSLDVADYERTVATLLAGGSDPVISKAPEGAWT
SAITDAALK
>Mature_329_residues
MKKLMISAAFAAGLGSAAHADDANSVTLQLQWVTQAQFAGYYVALDKGFYEEEGLDVTILPGGPDIAPPQVLAGGGADVM
LNWMPSALAAREKGLPVVNIAQPFKSSGLMLTCWKDTGITSVEDFRGKTIGVWFFGNEYPFLSWMSQAGIPTDGGEDGVT
VLKQGFNVDPLLQREADCISTMTYNEYGQVLDAGVSPDELVTFKYEDQGVATLEDGIYALEENLSDPVFQDKMVRFVRAS
MKGWEYAGANPEEAAGIVLDNDETGAQTEAHQVRMMGEIAKLIEGSDGSLDVADYERTVATLLAGGSDPVISKAPEGAWT
SAITDAALK

Specific function: Unknown

COG id: COG0715

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35144; Mature: 35144

Theoretical pI: Translated: 3.97; Mature: 3.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLMISAAFAAGLGSAAHADDANSVTLQLQWVTQAQFAGYYVALDKGFYEEEGLDVTIL
CCCEEEEHHHHHCCCCCCCCCCCCEEEEEEEEEEEHHHCEEEEEECCCCCCCCCCEEEEE
PGGPDIAPPQVLAGGGADVMLNWMPSALAAREKGLPVVNIAQPFKSSGLMLTCWKDTGIT
CCCCCCCCCCEEECCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCC
SVEDFRGKTIGVWFFGNEYPFLSWMSQAGIPTDGGEDGVTVLKQGFNVDPLLQREADCIS
CHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
TMTYNEYGQVLDAGVSPDELVTFKYEDQGVATLEDGIYALEENLSDPVFQDKMVRFVRAS
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MKGWEYAGANPEEAAGIVLDNDETGAQTEAHQVRMMGEIAKLIEGSDGSLDVADYERTVA
HCCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHH
TLLAGGSDPVISKAPEGAWTSAITDAALK
HHHCCCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MKKLMISAAFAAGLGSAAHADDANSVTLQLQWVTQAQFAGYYVALDKGFYEEEGLDVTIL
CCCEEEEHHHHHCCCCCCCCCCCCEEEEEEEEEEEHHHCEEEEEECCCCCCCCCCEEEEE
PGGPDIAPPQVLAGGGADVMLNWMPSALAAREKGLPVVNIAQPFKSSGLMLTCWKDTGIT
CCCCCCCCCCEEECCCCEEEEECCCHHHHHHHCCCCEEEECCCCCCCCEEEEEECCCCCC
SVEDFRGKTIGVWFFGNEYPFLSWMSQAGIPTDGGEDGVTVLKQGFNVDPLLQREADCIS
CHHHHCCCEEEEEEECCCCCHHHHHHHCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHH
TMTYNEYGQVLDAGVSPDELVTFKYEDQGVATLEDGIYALEENLSDPVFQDKMVRFVRAS
HHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MKGWEYAGANPEEAAGIVLDNDETGAQTEAHQVRMMGEIAKLIEGSDGSLDVADYERTVA
HCCCCCCCCCHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHH
TLLAGGSDPVISKAPEGAWTSAITDAALK
HHHCCCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA