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The map label for this gene is 110680259

Identifier: 110680259

GI number: 110680259

Start: 2943198

End: 2944772

Strand: Direct

Name: 110680259

Synonym: RD1_3069

Alternate gene names: NA

Gene position: 2943198-2944772 (Clockwise)

Preceding gene: 162139373

Following gene: 110680261

Centisome position: 71.21

GC content: 55.68

Gene sequence:

>1575_bases
ATGAAACTGTCCGCCTACCTCTCGCCGTCGCGCCACGGGGTCTACTACTTCCGCTGGCCACTCCCTCAGGCTGAGGAACA
AAAGCGCCGCACTGTCAGAATATCCTTGCGCACCAAGTGCCCAGATCGGGCTGGCGATCTTGCCCGTCATCTTGCATCCT
GTGGCAGATTGATACGCGAGAACAAAACTTTGGCTAGGCTCAGACAAGATGAGATGCGGGACATCGTGCGGAGTTACTTT
GCAGCTTCGCTGGATCGTTATGTGGAGCGTTTGAACGACACCGGGTTGCCTGAGCGGTCCCTTGATGCCCTGCGCCAAGA
GCTAGACGTCCACGAGGACGCCATAGGCGGTTTTGACGACCTGTCGGACCTTTACCTTGACACAGGCACCTTGGACAGCT
TCCGGGCCTCAGCGGGCCTTACAGAGGCTCAGTGGGCCGAAAATGAGCCAGCCCTGCGCCAAGAAATGCGCAAGGCCCGC
CGGGATCAGATCAAAGCCATTCTAAGCGCCGCTGAGAGCCTTGAAGGCTATTCCTTCACCAAACCATGCCAGACTGCGCC
AAGGCCACCACAGGCCCGCTCCGCGTCTCTGGGAGAGGCAATCGAAGACTTCATGGCTGAGCCGCAATGGTCCGACCATA
TGGCCGCAAAAGCAAGAGCCTTCTTGTCTGTGCTTTTGGAGTATTTCGGGCCTGATCGCAGGATGGCGGACATAACGCGC
CATGACGCTGCCGAAGTCAAAAAGGTGGTGCAGTCCTTGCCGATCAATCGGAAAACCAAGACTGAAACGAAAGACTTACC
GCTGCTTGAGGCGATAGAAGTGCCGGGAATGAAGAAGGTATCTGTTGAGACGGTGAATAACCATATGGCCATGTTCTATC
GCTTCTGGAAATGGGCGGTTACGCATGGAAAGGCGACTGAAAAGTTGTTTGAAGAGATGAAAATCACTGCGCGGAAAAAG
CCGGATGATGGACGCAAGGCATTCTCGCCAGCCCAAACCAAGCGATTGTTTCAAGAACTGACTGAGAACACGTCCGGGTT
TGTGAAGGAAGACGATCACAAGTGGGGTGCGCTTCTGGGTCTCTATACGGGTGCAAGACTGCGTGAGATTGCCCAGCTTG
ACGTCACCGACATCCGACAAGAAGGCGACATCTGGTTTATCGACATCAATGATGACGGGCCAAACAAGAGCCTCAAGACC
CCTGCCGCCAAGCGCCGTGTTCCTGTCCACTCGGATTTGATCCAACTTGGCTTCCTCGATTGGGTCGCGGCAAAGCCCGA
AGGACAACGCCTGTTCCTGTCCTTTAGCTACAATGCCAAGGAAGGTTATGGCCGCAACTTGGGTCGCCGGTTCAACAACG
TGCTCTTGCCGGGACTGGGCATGAAGGAGGGCGGTCTGGTGTTCCACAGCTTGCGACACACGATGGTCACGCGGCTTGCA
CAGGCGGGTGTGCCAGAACCACTGTTTCAGGAGATTGTCGGCCACGAGCGCCAAGGCGTGGCGCAACAGGTCTATTTCAA
GGAAGGGCACACGCTGGTGCAGAAACAAGAAGCCCTTGAGAAGTTTAAGGTTTAG

Upstream 100 bases:

>100_bases
GGTCTCGAGGGTTCGAATCCCTTCGTCTCCGCCATAATACGCTAAAACAATGACTTAGGTCTTGGACAGGCAAGTGCGAC
ACAGAGTGGAGCATATGCCC

Downstream 100 bases:

>100_bases
GGGCGTTGTCCTTCGCCGTGCAAGCCGCCTGCAAGTGCGGTGATAGTCTGGTGTGCCACGTCAATACTATCGCAAGCCAT
CATCCACTTGGCGAACTCGA

Product: phage integrase family site specific recombinase

Products: NA

Alternate protein names: Integrase; Phage-Related Integrase; Phage Integrase; Phage Integrase Family Protein; Phage Integrase Family Site Specific Recombinase; Site-Specific Recombinase Phage Integrase Family; Site-Specific Recombinase; Phage Integerase; Phage Integrase-Like Protein; Integrase/Resolvase Recombinase Protein; Prolidase (Xaa-Pro Dipeptidase

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MKLSAYLSPSRHGVYYFRWPLPQAEEQKRRTVRISLRTKCPDRAGDLARHLASCGRLIRENKTLARLRQDEMRDIVRSYF
AASLDRYVERLNDTGLPERSLDALRQELDVHEDAIGGFDDLSDLYLDTGTLDSFRASAGLTEAQWAENEPALRQEMRKAR
RDQIKAILSAAESLEGYSFTKPCQTAPRPPQARSASLGEAIEDFMAEPQWSDHMAAKARAFLSVLLEYFGPDRRMADITR
HDAAEVKKVVQSLPINRKTKTETKDLPLLEAIEVPGMKKVSVETVNNHMAMFYRFWKWAVTHGKATEKLFEEMKITARKK
PDDGRKAFSPAQTKRLFQELTENTSGFVKEDDHKWGALLGLYTGARLREIAQLDVTDIRQEGDIWFIDINDDGPNKSLKT
PAAKRRVPVHSDLIQLGFLDWVAAKPEGQRLFLSFSYNAKEGYGRNLGRRFNNVLLPGLGMKEGGLVFHSLRHTMVTRLA
QAGVPEPLFQEIVGHERQGVAQQVYFKEGHTLVQKQEALEKFKV

Sequences:

>Translated_524_residues
MKLSAYLSPSRHGVYYFRWPLPQAEEQKRRTVRISLRTKCPDRAGDLARHLASCGRLIRENKTLARLRQDEMRDIVRSYF
AASLDRYVERLNDTGLPERSLDALRQELDVHEDAIGGFDDLSDLYLDTGTLDSFRASAGLTEAQWAENEPALRQEMRKAR
RDQIKAILSAAESLEGYSFTKPCQTAPRPPQARSASLGEAIEDFMAEPQWSDHMAAKARAFLSVLLEYFGPDRRMADITR
HDAAEVKKVVQSLPINRKTKTETKDLPLLEAIEVPGMKKVSVETVNNHMAMFYRFWKWAVTHGKATEKLFEEMKITARKK
PDDGRKAFSPAQTKRLFQELTENTSGFVKEDDHKWGALLGLYTGARLREIAQLDVTDIRQEGDIWFIDINDDGPNKSLKT
PAAKRRVPVHSDLIQLGFLDWVAAKPEGQRLFLSFSYNAKEGYGRNLGRRFNNVLLPGLGMKEGGLVFHSLRHTMVTRLA
QAGVPEPLFQEIVGHERQGVAQQVYFKEGHTLVQKQEALEKFKV
>Mature_524_residues
MKLSAYLSPSRHGVYYFRWPLPQAEEQKRRTVRISLRTKCPDRAGDLARHLASCGRLIRENKTLARLRQDEMRDIVRSYF
AASLDRYVERLNDTGLPERSLDALRQELDVHEDAIGGFDDLSDLYLDTGTLDSFRASAGLTEAQWAENEPALRQEMRKAR
RDQIKAILSAAESLEGYSFTKPCQTAPRPPQARSASLGEAIEDFMAEPQWSDHMAAKARAFLSVLLEYFGPDRRMADITR
HDAAEVKKVVQSLPINRKTKTETKDLPLLEAIEVPGMKKVSVETVNNHMAMFYRFWKWAVTHGKATEKLFEEMKITARKK
PDDGRKAFSPAQTKRLFQELTENTSGFVKEDDHKWGALLGLYTGARLREIAQLDVTDIRQEGDIWFIDINDDGPNKSLKT
PAAKRRVPVHSDLIQLGFLDWVAAKPEGQRLFLSFSYNAKEGYGRNLGRRFNNVLLPGLGMKEGGLVFHSLRHTMVTRLA
QAGVPEPLFQEIVGHERQGVAQQVYFKEGHTLVQKQEALEKFKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 59657; Mature: 59657

Theoretical pI: Translated: 9.51; Mature: 9.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSAYLSPSRHGVYYFRWPLPQAEEQKRRTVRISLRTKCPDRAGDLARHLASCGRLIRE
CCCCCCCCCCCCCEEEEECCCCCHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
NKTLARLRQDEMRDIVRSYFAASLDRYVERLNDTGLPERSLDALRQELDVHEDAIGGFDD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
LSDLYLDTGTLDSFRASAGLTEAQWAENEPALRQEMRKARRDQIKAILSAAESLEGYSFT
HHHHHHCCCCCHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KPCQTAPRPPQARSASLGEAIEDFMAEPQWSDHMAAKARAFLSVLLEYFGPDRRMADITR
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HDAAEVKKVVQSLPINRKTKTETKDLPLLEAIEVPGMKKVSVETVNNHMAMFYRFWKWAV
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHH
THGKATEKLFEEMKITARKKPDDGRKAFSPAQTKRLFQELTENTSGFVKEDDHKWGALLG
HCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LYTGARLREIAQLDVTDIRQEGDIWFIDINDDGPNKSLKTPAAKRRVPVHSDLIQLGFLD
HHHHHHHHHHHHCCHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHH
WVAAKPEGQRLFLSFSYNAKEGYGRNLGRRFNNVLLPGLGMKEGGLVFHSLRHTMVTRLA
HHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
QAGVPEPLFQEIVGHERQGVAQQVYFKEGHTLVQKQEALEKFKV
HCCCCCHHHHHHHCCHHHCHHHHHHHHCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLSAYLSPSRHGVYYFRWPLPQAEEQKRRTVRISLRTKCPDRAGDLARHLASCGRLIRE
CCCCCCCCCCCCCEEEEECCCCCHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHC
NKTLARLRQDEMRDIVRSYFAASLDRYVERLNDTGLPERSLDALRQELDVHEDAIGGFDD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHH
LSDLYLDTGTLDSFRASAGLTEAQWAENEPALRQEMRKARRDQIKAILSAAESLEGYSFT
HHHHHHCCCCCHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KPCQTAPRPPQARSASLGEAIEDFMAEPQWSDHMAAKARAFLSVLLEYFGPDRRMADITR
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
HDAAEVKKVVQSLPINRKTKTETKDLPLLEAIEVPGMKKVSVETVNNHMAMFYRFWKWAV
HHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHH
THGKATEKLFEEMKITARKKPDDGRKAFSPAQTKRLFQELTENTSGFVKEDDHKWGALLG
HCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHH
LYTGARLREIAQLDVTDIRQEGDIWFIDINDDGPNKSLKTPAAKRRVPVHSDLIQLGFLD
HHHHHHHHHHHHCCHHHHHCCCCEEEEEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHH
WVAAKPEGQRLFLSFSYNAKEGYGRNLGRRFNNVLLPGLGMKEGGLVFHSLRHTMVTRLA
HHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
QAGVPEPLFQEIVGHERQGVAQQVYFKEGHTLVQKQEALEKFKV
HCCCCCHHHHHHHCCHHHCHHHHHHHHCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA