Click here to switch to the map view.

The map label for this gene is 110680255

Identifier: 110680255

GI number: 110680255

Start: 2933452

End: 2933622

Strand: Reverse

Name: 110680255

Synonym: RD1_3064

Alternate gene names: NA

Gene position: 2933622-2933452 (Counterclockwise)

Preceding gene: 110680256

Following gene: 110680245

Centisome position: 70.98

GC content: 60.23

Gene sequence:

>171_bases
ATGGATGGCCGGAGGTTCCGTGTTGTGGCCATCATGGACGATTGCAGCCGGGAGTGTTTGGTGCTTGTGCCCGACACGTC
ACTGTCTGGCGCGCGGCAGACACGCGAGCTGGATCAGATTATTCAGGTACGCCGGATGCCCACGGTAAATGTCAGTGACC
TGCCCCCCTGA

Upstream 100 bases:

>100_bases
ATGGGTCTGCCAGAGACGATCCATCAGCGGTGGAGGCCGGGCTTCGTTTCAGCCGCCTTCAGACCGTCTCATCCTTTGCG
ACGCAAACGACTGCCGGGCA

Downstream 100 bases:

>100_bases
GAGTTCGCGTTTTTTAGTTAGCTCTGTTCAGGTTTTGGTCCTCTCTTGACCGTTGGTGGTACTCCCACGGGGTGAGCCCG
TCGAGGCTTGAATGTGGGCG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: Integrase Catalytic Subunit; Transposase

Number of amino acids: Translated: 56; Mature: 56

Protein sequence:

>56_residues
MDGRRFRVVAIMDDCSRECLVLVPDTSLSGARQTRELDQIIQVRRMPTVNVSDLPP

Sequences:

>Translated_56_residues
MDGRRFRVVAIMDDCSRECLVLVPDTSLSGARQTRELDQIIQVRRMPTVNVSDLPP
>Mature_56_residues
MDGRRFRVVAIMDDCSRECLVLVPDTSLSGARQTRELDQIIQVRRMPTVNVSDLPP

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 6357; Mature: 6357

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGRRFRVVAIMDDCSRECLVLVPDTSLSGARQTRELDQIIQVRRMPTVNVSDLPP
CCCCEEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDGRRFRVVAIMDDCSRECLVLVPDTSLSGARQTRELDQIIQVRRMPTVNVSDLPP
CCCCEEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA