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The map label for this gene is 110680222

Identifier: 110680222

GI number: 110680222

Start: 2900621

End: 2901799

Strand: Reverse

Name: 110680222

Synonym: RD1_3028

Alternate gene names: NA

Gene position: 2901799-2900621 (Counterclockwise)

Preceding gene: 110680223

Following gene: 110680221

Centisome position: 70.21

GC content: 56.49

Gene sequence:

>1179_bases
ATGCGCAAGACCGAAGCAAAAGCGGCGGGCGGGATAGGTTTGTCCCCCGCTGAGGATGTCAAGCGAGCCGTTACCGGCTT
TGTGAGTGACTTCAAAGAGTTCCAAACCGAAATGAATGAAAAACTTCAACAAACAGAAGAGCGACTGACCATGCTGGACC
GTAAATCAAATATCCTTCAACGTACACCTCTGGGCGGCGCGGCAGATGCCGGTGCGCCGCATCAAAAGGCCTTTAACGCC
TATCTTCGCTCCGGCGATGACGACGGGCTGCGCGGGCTGGAGATGGATGTGAAATCGCTCTCCACGAATGTGAATTCGGA
TGGCGGATATCTTGTTGATCCCCAAACCTCTGACACGGTGCAATCGGTTCTGAAATCTGCGGCGTCAGTCCGTTCGATTG
CTTCGGTCGTGAACATCGAGGCGTCTTCCTACGAGGTTCTGGTAGATCACACCGATGTTGGCGCTGGCTGGGCCACGGAG
ACCGACAGCACGGCAGAAACCGATACACCGCAGATCGGCAAGATCACGATTGCATTGCATGAGCTGAGCGCGCTGCCAAA
GGCTTCGCAGCGTTTGCTGGACGACAGCGCCTTTGACATCGAAGGGTGGCTTGCGGGACGCATCGCGGACAAATTTGCGC
GTGCCGAAGCGGCGGCCTTTATCTCCGGAAACGGGCAGGACAAACCGCGCGGATTTCTGAGCCATTCCTTTGTTGATAAC
GATATCTGGACCTGGGAAAATATCGGCTATGTCCCGACCGGCGTGGCAGGCGATGCGACACCGGATTCCATTGTTGATGT
GGTTTATGCGCTCGGGGCGCAGTACCGCGCGAATGCGACATTCGTGATGAATTCGAAAACGGCCGGTCTGATCCGGAAGC
TCAAGGACGCAGATGGCCGTTTCTTGTGGTCAGATGGTTTGGCTGCGGCGGAACCTGCGCGGTTGATGGGGTATCCCGTG
TTGATTGCGGAAGACATGCCCGACCCGGATGCGGGTGAGCACGCGATTGCCTTTGGCGACTTTTCGGCAGGTTATACAAT
CGCCGAACGTCCCGATCTGCGCGTTCTGCGCGATCCTTTCAGCGCCAAGCCGCATGTCTTGTTCTATGCGACCAAGCGTG
TTGGCGGTGATGTCAGTGATTTTGCCGCGATCAAAACCCTGAGATTCGCGGCCTCCTAA

Upstream 100 bases:

>100_bases
GAAGGCGCGCGCGCTGAATTGGCGCGCCGCTGATGCGCTCCTGTCGTTGCGGTCTGGCGAGAACGTCTGACCTGAACACT
TAAATCTAAGGGAAATTGCC

Downstream 100 bases:

>100_bases
GAGGCTGCGAGACCGGCGGCGGGCCTTTGGCCCTGCTTGCCGGGCCGGGTGCGCGCCTGTGCCATCTCATGTTGTCTAGC
TGCTCCCCTCCGACCGAGCA

Product: phage major capsid protein, putative

Products: NA

Alternate protein names: HK97 Family Phage Capsid Protein; Phage Capsid Protein HK; Capsid Protein; HK97 Family Capsid Protein; Capsid Protein Of Prophage; Phage Capsid Family; Phage Prohead Protease And Phage Capsid Protein; Phage Phi-C31 Capsid; Phage Prohead Protease; Phage Capsid Protein; Prophage; Phage Capsid Protein Gp; HK97 Family Phage Prohead Protease/Phage Capsid Protein; Capsid C; Phage Capsid Family Protein; Phage Capsid Protein-Like Protein

Number of amino acids: Translated: 392; Mature: 392

Protein sequence:

>392_residues
MRKTEAKAAGGIGLSPAEDVKRAVTGFVSDFKEFQTEMNEKLQQTEERLTMLDRKSNILQRTPLGGAADAGAPHQKAFNA
YLRSGDDDGLRGLEMDVKSLSTNVNSDGGYLVDPQTSDTVQSVLKSAASVRSIASVVNIEASSYEVLVDHTDVGAGWATE
TDSTAETDTPQIGKITIALHELSALPKASQRLLDDSAFDIEGWLAGRIADKFARAEAAAFISGNGQDKPRGFLSHSFVDN
DIWTWENIGYVPTGVAGDATPDSIVDVVYALGAQYRANATFVMNSKTAGLIRKLKDADGRFLWSDGLAAAEPARLMGYPV
LIAEDMPDPDAGEHAIAFGDFSAGYTIAERPDLRVLRDPFSAKPHVLFYATKRVGGDVSDFAAIKTLRFAAS

Sequences:

>Translated_392_residues
MRKTEAKAAGGIGLSPAEDVKRAVTGFVSDFKEFQTEMNEKLQQTEERLTMLDRKSNILQRTPLGGAADAGAPHQKAFNA
YLRSGDDDGLRGLEMDVKSLSTNVNSDGGYLVDPQTSDTVQSVLKSAASVRSIASVVNIEASSYEVLVDHTDVGAGWATE
TDSTAETDTPQIGKITIALHELSALPKASQRLLDDSAFDIEGWLAGRIADKFARAEAAAFISGNGQDKPRGFLSHSFVDN
DIWTWENIGYVPTGVAGDATPDSIVDVVYALGAQYRANATFVMNSKTAGLIRKLKDADGRFLWSDGLAAAEPARLMGYPV
LIAEDMPDPDAGEHAIAFGDFSAGYTIAERPDLRVLRDPFSAKPHVLFYATKRVGGDVSDFAAIKTLRFAAS
>Mature_392_residues
MRKTEAKAAGGIGLSPAEDVKRAVTGFVSDFKEFQTEMNEKLQQTEERLTMLDRKSNILQRTPLGGAADAGAPHQKAFNA
YLRSGDDDGLRGLEMDVKSLSTNVNSDGGYLVDPQTSDTVQSVLKSAASVRSIASVVNIEASSYEVLVDHTDVGAGWATE
TDSTAETDTPQIGKITIALHELSALPKASQRLLDDSAFDIEGWLAGRIADKFARAEAAAFISGNGQDKPRGFLSHSFVDN
DIWTWENIGYVPTGVAGDATPDSIVDVVYALGAQYRANATFVMNSKTAGLIRKLKDADGRFLWSDGLAAAEPARLMGYPV
LIAEDMPDPDAGEHAIAFGDFSAGYTIAERPDLRVLRDPFSAKPHVLFYATKRVGGDVSDFAAIKTLRFAAS

Specific function: Unknown

COG id: COG4653

COG function: function code R; Predicted phage phi-C31 gp36 major capsid-like protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42044; Mature: 42044

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKTEAKAAGGIGLSPAEDVKRAVTGFVSDFKEFQTEMNEKLQQTEERLTMLDRKSNILQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTPLGGAADAGAPHQKAFNAYLRSGDDDGLRGLEMDVKSLSTNVNSDGGYLVDPQTSDTV
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHH
QSVLKSAASVRSIASVVNIEASSYEVLVDHTDVGAGWATETDSTAETDTPQIGKITIALH
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEH
ELSALPKASQRLLDDSAFDIEGWLAGRIADKFARAEAAAFISGNGQDKPRGFLSHSFVDN
HHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHCCCC
DIWTWENIGYVPTGVAGDATPDSIVDVVYALGAQYRANATFVMNSKTAGLIRKLKDADGR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCC
FLWSDGLAAAEPARLMGYPVLIAEDMPDPDAGEHAIAFGDFSAGYTIAERPDLRVLRDPF
EEECCCCCCCCCHHHHCCEEEEECCCCCCCCCCCEEEEECCCCCCEECCCCCCHHHCCCC
SAKPHVLFYATKRVGGDVSDFAAIKTLRFAAS
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRKTEAKAAGGIGLSPAEDVKRAVTGFVSDFKEFQTEMNEKLQQTEERLTMLDRKSNILQ
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTPLGGAADAGAPHQKAFNAYLRSGDDDGLRGLEMDVKSLSTNVNSDGGYLVDPQTSDTV
CCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHH
QSVLKSAASVRSIASVVNIEASSYEVLVDHTDVGAGWATETDSTAETDTPQIGKITIALH
HHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEH
ELSALPKASQRLLDDSAFDIEGWLAGRIADKFARAEAAAFISGNGQDKPRGFLSHSFVDN
HHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHCCCC
DIWTWENIGYVPTGVAGDATPDSIVDVVYALGAQYRANATFVMNSKTAGLIRKLKDADGR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCC
FLWSDGLAAAEPARLMGYPVLIAEDMPDPDAGEHAIAFGDFSAGYTIAERPDLRVLRDPF
EEECCCCCCCCCHHHHCCEEEEECCCCCCCCCCCEEEEECCCCCCEECCCCCCHHHCCCC
SAKPHVLFYATKRVGGDVSDFAAIKTLRFAAS
CCCCCEEEEEECCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA