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The map label for this gene is ycaD [C]

Identifier: 110680195

GI number: 110680195

Start: 2874172

End: 2875437

Strand: Reverse

Name: ycaD [C]

Synonym: RD1_2997

Alternate gene names: 110680195

Gene position: 2875437-2874172 (Counterclockwise)

Preceding gene: 110680196

Following gene: 110680194

Centisome position: 69.57

GC content: 57.98

Gene sequence:

>1266_bases
ATGTTTCAGGTATTAACCAGCGCTTGGGCGCTTTTGTTGGGCATGTGCCTGTTGATGGTCGGCAATGGCATGCAAGGCAC
GCTTCTGGGTATCCGGGGCGAGATCGAAGGGTTTTCGACCCTTGAGATGTCCATCGTCATGTCCGCCTATTTCGTCGGGT
TCCTGGGCGGGTCACGCATGGCACCGGGGATGATCCGGCGCGTTGGTCACGTGCGGGTCTTTGCGGCATTGGCCTCGCTT
ATATCCGCAGTGATGATCCTTTATCCGACCTTTGCCGAAGTGTGGCTCTGGACGCTGGGGCGTGTGTTGATCGGGTTTTG
CTTTTCAGCCGTCTACGTCACGGCTGAAAGCTGGCTGAACAATGCGGCCACCAATGAAAACAGGGGCCAGACGCTGTCTC
TCTACATGATCGTGCAGACTGCGGGCATCGTGATCAGCCAGGCGCTGCTCCTGACGGCGGACCCGTCGGGCTACGTGCTG
TTCGTGATCCCGTCGGTACTGGTGTCGATTGCCGTGACGCCGATCTTGCTGTCGATCAGCCCGACGCCCGCCTTTGATAT
GACCAAACCGATGAGCCTCAAAGAACTGGCGGGCGTGTCACCTTTGGGCTGCGTGGGCATGTTCCTGCTGGGTGGTATTT
TCTCGGCCCAGTTCGGCATGGCTTCGGTTTACGGGGCCAAGGCCGGGTTGTCTGTCGCCCAGATATCTACCTTCGTGGCG
ATGTTTTTCGTCGGCTCCGTATTGTTGCAATACCCCATCGGGTGGATTTCGGACCGGATGGACCGGCGTTTCCTGATCCT
GATCGTTGCAGCCATCGGGGCGGGTGGTTCGGCGCTTGGCATGGTTCTGGGGCATAACTTCGCATTTCTGCTGGCCTCCG
CCTTTATCGTGGGTGGCATGTCCAACCCGCTTTATTCGTTGCTGATCGCCCACACGAATGACTTTCTTCAGCACGAGGAC
ATGGCCGCCGCGTCGGGTGGGTTGATTTTCATCAACGGGCTTGGCGCGATTGCGGGGCCGCTGATTACGGGCTCGCTGAT
GGATGTGGTGGGGCCGTCAGGTTTCTACCTCTTTACCGCGATATTGTTCGTGGCATTGGTTGCCTATGCCGCCTACCGCT
CGACAAGGCGCAGCGCCATTGCCGTGGAAGACACCGGTGCCTATGTGGCCGTGACGCCAAGCTATACGTCCGTTGCGCTG
GAATATGCTCAAGAATACGCCATCGAGACCGAAAAAGAAGACGATCTTGTCGCAAAAGACAGATGA

Upstream 100 bases:

>100_bases
CACATTACGACGCAATAGAGTCGTAGCTGAGCGGTTTTCGCAGGATGCGATACTGCAAGACGCCGCCAAGAGAGTTTTTG
CCGCGCGCTTTGGAGTCGTC

Downstream 100 bases:

>100_bases
TTGTGTCGCGGTGACGTAAAATGTGAATAGGTTAATCTTGTAAAACGTGTCTAACATCAACAGGTGGCACTTGATGAGTA
GAGAGAGATGGTATGACTGG

Product: major facilitator superfamily protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MFQVLTSAWALLLGMCLLMVGNGMQGTLLGIRGEIEGFSTLEMSIVMSAYFVGFLGGSRMAPGMIRRVGHVRVFAALASL
ISAVMILYPTFAEVWLWTLGRVLIGFCFSAVYVTAESWLNNAATNENRGQTLSLYMIVQTAGIVISQALLLTADPSGYVL
FVIPSVLVSIAVTPILLSISPTPAFDMTKPMSLKELAGVSPLGCVGMFLLGGIFSAQFGMASVYGAKAGLSVAQISTFVA
MFFVGSVLLQYPIGWISDRMDRRFLILIVAAIGAGGSALGMVLGHNFAFLLASAFIVGGMSNPLYSLLIAHTNDFLQHED
MAAASGGLIFINGLGAIAGPLITGSLMDVVGPSGFYLFTAILFVALVAYAAYRSTRRSAIAVEDTGAYVAVTPSYTSVAL
EYAQEYAIETEKEDDLVAKDR

Sequences:

>Translated_421_residues
MFQVLTSAWALLLGMCLLMVGNGMQGTLLGIRGEIEGFSTLEMSIVMSAYFVGFLGGSRMAPGMIRRVGHVRVFAALASL
ISAVMILYPTFAEVWLWTLGRVLIGFCFSAVYVTAESWLNNAATNENRGQTLSLYMIVQTAGIVISQALLLTADPSGYVL
FVIPSVLVSIAVTPILLSISPTPAFDMTKPMSLKELAGVSPLGCVGMFLLGGIFSAQFGMASVYGAKAGLSVAQISTFVA
MFFVGSVLLQYPIGWISDRMDRRFLILIVAAIGAGGSALGMVLGHNFAFLLASAFIVGGMSNPLYSLLIAHTNDFLQHED
MAAASGGLIFINGLGAIAGPLITGSLMDVVGPSGFYLFTAILFVALVAYAAYRSTRRSAIAVEDTGAYVAVTPSYTSVAL
EYAQEYAIETEKEDDLVAKDR
>Mature_421_residues
MFQVLTSAWALLLGMCLLMVGNGMQGTLLGIRGEIEGFSTLEMSIVMSAYFVGFLGGSRMAPGMIRRVGHVRVFAALASL
ISAVMILYPTFAEVWLWTLGRVLIGFCFSAVYVTAESWLNNAATNENRGQTLSLYMIVQTAGIVISQALLLTADPSGYVL
FVIPSVLVSIAVTPILLSISPTPAFDMTKPMSLKELAGVSPLGCVGMFLLGGIFSAQFGMASVYGAKAGLSVAQISTFVA
MFFVGSVLLQYPIGWISDRMDRRFLILIVAAIGAGGSALGMVLGHNFAFLLASAFIVGGMSNPLYSLLIAHTNDFLQHED
MAAASGGLIFINGLGAIAGPLITGSLMDVVGPSGFYLFTAILFVALVAYAAYRSTRRSAIAVEDTGAYVAVTPSYTSVAL
EYAQEYAIETEKEDDLVAKDR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=325, Percent_Identity=27.6923076923077, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44637; Mature: 44637

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQVLTSAWALLLGMCLLMVGNGMQGTLLGIRGEIEGFSTLEMSIVMSAYFVGFLGGSRM
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC
APGMIRRVGHVRVFAALASLISAVMILYPTFAEVWLWTLGRVLIGFCFSAVYVTAESWLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAATNENRGQTLSLYMIVQTAGIVISQALLLTADPSGYVLFVIPSVLVSIAVTPILLSIS
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHEEEECCCCEEEEHHHHHHHHHHHHHHEEEEC
PTPAFDMTKPMSLKELAGVSPLGCVGMFLLGGIFSAQFGMASVYGAKAGLSVAQISTFVA
CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHH
MFFVGSVLLQYPIGWISDRMDRRFLILIVAAIGAGGSALGMVLGHNFAFLLASAFIVGGM
HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHCCC
SNPLYSLLIAHTNDFLQHEDMAAASGGLIFINGLGAIAGPLITGSLMDVVGPSGFYLFTA
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHH
ILFVALVAYAAYRSTRRSAIAVEDTGAYVAVTPSYTSVALEYAQEYAIETEKEDDLVAKD
HHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
R
C
>Mature Secondary Structure
MFQVLTSAWALLLGMCLLMVGNGMQGTLLGIRGEIEGFSTLEMSIVMSAYFVGFLGGSRM
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCC
APGMIRRVGHVRVFAALASLISAVMILYPTFAEVWLWTLGRVLIGFCFSAVYVTAESWLN
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAATNENRGQTLSLYMIVQTAGIVISQALLLTADPSGYVLFVIPSVLVSIAVTPILLSIS
CCCCCCCCCCEEEEEEHHHHHHHHHHHHHEEEECCCCEEEEHHHHHHHHHHHHHHEEEEC
PTPAFDMTKPMSLKELAGVSPLGCVGMFLLGGIFSAQFGMASVYGAKAGLSVAQISTFVA
CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHH
MFFVGSVLLQYPIGWISDRMDRRFLILIVAAIGAGGSALGMVLGHNFAFLLASAFIVGGM
HHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHCHHHHHHHHHHHHCCC
SNPLYSLLIAHTNDFLQHEDMAAASGGLIFINGLGAIAGPLITGSLMDVVGPSGFYLFTA
CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCHHHHHHH
ILFVALVAYAAYRSTRRSAIAVEDTGAYVAVTPSYTSVALEYAQEYAIETEKEDDLVAKD
HHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHCCCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]