| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is modB [H]
Identifier: 110680117
GI number: 110680117
Start: 2790658
End: 2791350
Strand: Direct
Name: modB [H]
Synonym: RD1_2914
Alternate gene names: 110680117
Gene position: 2790658-2791350 (Clockwise)
Preceding gene: 110680116
Following gene: 110680118
Centisome position: 67.52
GC content: 63.78
Gene sequence:
>693_bases ATGGACTGGTTAAGCCCGCAAGAGTGGAACGCCGTCGCACTGTCGCTGCGCGTCGCGTTCTGGGCCACGCTGTGCAGCCT GCCCTTTGCGCTGGTCACCGCACATCTTCTGGCGCGGGGTCGTTTTCCCGGCAAGCAACTCTTCAACGGCATCGTGCATC TGCCCCTGATCCTGCCGCCTGTGGTGACCGGGTACATTTTGCTGCTGACCTTCAGCATTCAGGCTCCCGTGGGCTATGCG CTGTCCCAGATCGGCATCGTCTTTGCCTTTCGCTGGACGGGTGCTGCGCTGGCGGCGGCCATTATGGCCTTTCCGCTGAT GGTGCGCGCCATCCGCCTGTCCATCGAGGCGGTGGACCCCAAACTCGAAGAAGCCGCCGCCACCCTCGGGGCCTCGCGGG TGTGGGTCTATCTGACGGTCACGCTGCCGTTGATCCTGCCCGGTGTTCTGGCGGGCAGCATCCTCGCCTTTGCCAAGGCC ATCGGTGAGTTCGGCGCGACCATTACCTTTGTGTCCAACATTCCCGGCCAGACGCAGACGCTGCCCTCTGCGGTCTATGC CTTCTTGCAGGTGCCGGGGGCCGAAGGGTCCGCCCTGCGGCTGGTCGTGATTTCAATTGTCATCGCGATGAGTGCGCTTT TGCTGTCGGAAATCCTGTCGCGCCGGGTCGCCGCTCGGATTGGTGCCGCATGA
Upstream 100 bases:
>100_bases CTCCACAGGCGCAGGCGTTTCTTGACTATCTCACCGGTGACGCGGCAGATAAGGTGTTCGCAGATCTCGGGTTTCTGGTG GGGGCAGAATAAAGCGTGCG
Downstream 100 bases:
>100_bases GCCTGTCTGTCTCTCTGAAACACGGGTTTGCGGGGTTTGATCTGGATGCGTCCTTCGAAGCACCCAACGGGATCACCATG TTATACGGGCGCTCGGGTTC
Product: molybdate ABC transporter permease protein
Products: ADP; phosphate; MoO42- [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 230; Mature: 230
Protein sequence:
>230_residues MDWLSPQEWNAVALSLRVAFWATLCSLPFALVTAHLLARGRFPGKQLFNGIVHLPLILPPVVTGYILLLTFSIQAPVGYA LSQIGIVFAFRWTGAALAAAIMAFPLMVRAIRLSIEAVDPKLEEAAATLGASRVWVYLTVTLPLILPGVLAGSILAFAKA IGEFGATITFVSNIPGQTQTLPSAVYAFLQVPGAEGSALRLVVISIVIAMSALLLSEILSRRVAARIGAA
Sequences:
>Translated_230_residues MDWLSPQEWNAVALSLRVAFWATLCSLPFALVTAHLLARGRFPGKQLFNGIVHLPLILPPVVTGYILLLTFSIQAPVGYA LSQIGIVFAFRWTGAALAAAIMAFPLMVRAIRLSIEAVDPKLEEAAATLGASRVWVYLTVTLPLILPGVLAGSILAFAKA IGEFGATITFVSNIPGQTQTLPSAVYAFLQVPGAEGSALRLVVISIVIAMSALLLSEILSRRVAARIGAA >Mature_230_residues MDWLSPQEWNAVALSLRVAFWATLCSLPFALVTAHLLARGRFPGKQLFNGIVHLPLILPPVVTGYILLLTFSIQAPVGYA LSQIGIVFAFRWTGAALAAAIMAFPLMVRAIRLSIEAVDPKLEEAAATLGASRVWVYLTVTLPLILPGVLAGSILAFAKA IGEFGATITFVSNIPGQTQTLPSAVYAFLQVPGAEGSALRLVVISIVIAMSALLLSEILSRRVAARIGAA
Specific function: Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4149
COG function: function code P; ABC-type molybdate transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1786980, Length=226, Percent_Identity=57.5221238938053, Blast_Score=223, Evalue=1e-59, Organism=Escherichia coli, GI1788764, Length=186, Percent_Identity=36.0215053763441, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI87082099, Length=222, Percent_Identity=30.6306306306306, Blast_Score=94, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR011867 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 24360; Mature: 24360
Theoretical pI: Translated: 10.24; Mature: 10.24
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDWLSPQEWNAVALSLRVAFWATLCSLPFALVTAHLLARGRFPGKQLFNGIVHLPLILPP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VVTGYILLLTFSIQAPVGYALSQIGIVFAFRWTGAALAAAIMAFPLMVRAIRLSIEAVDP HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KLEEAAATLGASRVWVYLTVTLPLILPGVLAGSILAFAKAIGEFGATITFVSNIPGQTQT HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHH LPSAVYAFLQVPGAEGSALRLVVISIVIAMSALLLSEILSRRVAARIGAA HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDWLSPQEWNAVALSLRVAFWATLCSLPFALVTAHLLARGRFPGKQLFNGIVHLPLILPP CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VVTGYILLLTFSIQAPVGYALSQIGIVFAFRWTGAALAAAIMAFPLMVRAIRLSIEAVDP HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC KLEEAAATLGASRVWVYLTVTLPLILPGVLAGSILAFAKAIGEFGATITFVSNIPGQTQT HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHH LPSAVYAFLQVPGAEGSALRLVVISIVIAMSALLLSEILSRRVAARIGAA HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; MoO42- [Periplasm]; H2O [C]
Specific reaction: ATP + MoO42- [Periplasm] + H2O = ADP + phosphate + MoO42- [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]