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The map label for this gene is 110679998

Identifier: 110679998

GI number: 110679998

Start: 2658347

End: 2658961

Strand: Direct

Name: 110679998

Synonym: RD1_2789

Alternate gene names: NA

Gene position: 2658347-2658961 (Clockwise)

Preceding gene: 110679997

Following gene: 110679999

Centisome position: 64.32

GC content: 62.28

Gene sequence:

>615_bases
ATGACGGCGCACGCCATGAACGAAACAGCGATTTCGGACCGGCTCAGCCAATTGGCGGATAGCGCGCAGGGCGATGCGGT
GTCGCTCGACTGGATCCTGAGCCAGCTGCACGAACGCGCCTTTGGTCTGTTCCTGCTGGTGCTGGCGCTGCCCTGTTGCA
TCCCTTTTCTCTATGGGATTCCGCAGATTGTCGCATTGCCCTTGATGTTTGTCTCCGCGCAGATCCTGTTCGGGCGCCAG
GCCCCGTGGCTGCCTGAACGGCTGGCCACGCGCTGCGTCTCGGTCGAAGGCCTGCACAACCTGTCACGCCGCGCCGGCCC
CTCCCTGCGCCGGATCGAAGCCATCAGCCGCCCAAGACAAGCCCAGTTGACGCGCGCGCCCCTTGACCGGATCGTGGGTC
TGGCCCTGGTGCTGTTCAGCGCCTCAATTCTGGTTCCGCTGCCGGGTACTAACACTGTGCCTGGCTTTGCGGTCGTCCTG
ATCTCGATGGGTCTGTTGCAACGCGATGGCATCCTCGTGATCTTTGGCCTGATCCTTGGCACTGCATGGATCGCGACCCT
CATCTTTGCGGGCGCAACACTGGCGAGCCTGATAAAAACGTGGATGGGGTTTTGA

Upstream 100 bases:

>100_bases
GTCGATGTCCTTTCCCGCGCTGGCGCAGCGCTGCGCGATTTGCTAGGCGGAGCCGGAAAACCAGTGGAATCGGTATTGTC
CACAATGCCAGGAGAAACAC

Downstream 100 bases:

>100_bases
ACGGCGCCCGGCTCGCCAGCCTCGCCGCATTCGGCTCTGCGGCGCTGCTTGCAGGGGCCTTCCTGTTTCAGGCGCTTGGC
TATGCCCCCTGTCAGATGTG

Product: ExoD family exopolysaccharide synthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 203

Protein sequence:

>204_residues
MTAHAMNETAISDRLSQLADSAQGDAVSLDWILSQLHERAFGLFLLVLALPCCIPFLYGIPQIVALPLMFVSAQILFGRQ
APWLPERLATRCVSVEGLHNLSRRAGPSLRRIEAISRPRQAQLTRAPLDRIVGLALVLFSASILVPLPGTNTVPGFAVVL
ISMGLLQRDGILVIFGLILGTAWIATLIFAGATLASLIKTWMGF

Sequences:

>Translated_204_residues
MTAHAMNETAISDRLSQLADSAQGDAVSLDWILSQLHERAFGLFLLVLALPCCIPFLYGIPQIVALPLMFVSAQILFGRQ
APWLPERLATRCVSVEGLHNLSRRAGPSLRRIEAISRPRQAQLTRAPLDRIVGLALVLFSASILVPLPGTNTVPGFAVVL
ISMGLLQRDGILVIFGLILGTAWIATLIFAGATLASLIKTWMGF
>Mature_203_residues
TAHAMNETAISDRLSQLADSAQGDAVSLDWILSQLHERAFGLFLLVLALPCCIPFLYGIPQIVALPLMFVSAQILFGRQA
PWLPERLATRCVSVEGLHNLSRRAGPSLRRIEAISRPRQAQLTRAPLDRIVGLALVLFSASILVPLPGTNTVPGFAVVLI
SMGLLQRDGILVIFGLILGTAWIATLIFAGATLASLIKTWMGF

Specific function: Unknown

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To R.meliloti exoD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 22052; Mature: 21920

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAHAMNETAISDRLSQLADSAQGDAVSLDWILSQLHERAFGLFLLVLALPCCIPFLYGI
CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PQIVALPLMFVSAQILFGRQAPWLPERLATRCVSVEGLHNLSRRAGPSLRRIEAISRPRQ
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHH
AQLTRAPLDRIVGLALVLFSASILVPLPGTNTVPGFAVVLISMGLLQRDGILVIFGLILG
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
TAWIATLIFAGATLASLIKTWMGF
HHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAHAMNETAISDRLSQLADSAQGDAVSLDWILSQLHERAFGLFLLVLALPCCIPFLYGI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PQIVALPLMFVSAQILFGRQAPWLPERLATRCVSVEGLHNLSRRAGPSLRRIEAISRPRQ
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHH
AQLTRAPLDRIVGLALVLFSASILVPLPGTNTVPGFAVVLISMGLLQRDGILVIFGLILG
HHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHH
TAWIATLIFAGATLASLIKTWMGF
HHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]