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The map label for this gene is ctaA

Identifier: 110679942

GI number: 110679942

Start: 2600605

End: 2601753

Strand: Reverse

Name: ctaA

Synonym: RD1_2728

Alternate gene names: 110679942

Gene position: 2601753-2600605 (Counterclockwise)

Preceding gene: 110679943

Following gene: 110679941

Centisome position: 62.95

GC content: 60.84

Gene sequence:

>1149_bases
ATGAGCAGCAAACGCAAGTTGTTTGAAGAAGTTGGGGCAGCGGCGGCCACCCGGCCAGCGGCGCAACCCGGTCTTATCGA
CAAGCGGCACAGCGGTGCCCGCAAAGCCATTCGTGTGTGGTTGCAAATTCTTTTCGCGCTGGTCTTTATCATGATCGCGG
TCGGGGGGCTGACCCGCCTGACCGACAGCGGGCTCAGCATCACCGAATGGCGCCCCCTGACCGGCGCATTGCCGCCCCTG
TCGGAGGCGGAATGGCAGTCCGAATTCGAAAAGTATCAGGCCATTGATGAGTTTCGCATTCAGAACCAATGGATGCAGAT
GGCCGATTTCAAGGTCATCTACTGGTGGGAATGGGGCCACCGCCAGCTTGGGCGCGTGATTGGCGTGGTCTGGGCGCTTG
GCTTTGGCTATTTTCTTGTGCGCAGACAAGTGCCTGCGGGGTGGCATGGCAAGCTGTTGTTCCTCGGTCTGCTCGGGGGC
GCGCAGGGTGCCATCGGCTGGTGGATGGTGGCCTCTGGCGTGACGCAGGGCGAAGGGGTGACCGATGTGGCCAGCTATCG
CCTCGCCACCCATCTGGGGCTTGCCTTTGTGATCCTCGGGTTCATTGCGTGGTATATCATGGAACTGGGCCGCAGTGCGC
CCGATCTGATGCAGGCGCGCCGGATCAAGGAGGGCAAGCAATGGGGCATGTCCACGGGGCTGTTGCATTTCACCTTTCTG
CAAATTCTTCTCGGGGCGCTGGTAGCCGGGATCGACGCCGGGCGCAGCTATACCGACTGGCCCATGATGGGCGGGCAGTG
GTTCCCCTCAACCGCGCTTGTGCTGGAACCGATCTGGCGCAACTTCTTTGAAAGCCCGGGATTGGTCCAGTTCATGCATC
GTGTGACGGGCTATGTGCTGATCCTCTTTACGGTCGTGGTCTGGTTGCGCGGGCGCAGATCGAGCCATCCGCACACGCGT
TTTGCCTTCAATGCCGTACTAGCGGCCATGACGTTGCAGATCGTGCTGGGGATCGTGACCGTGCTTTATGGCGCGCCCGC
GCATATTGCCATTTTCCACCAGACCCTTGCGGTGATTGTCTGGGTGCTGATCCTGCGGGCGCGCTTCCTGAGTGGATACC
CGATTGCCACATCCGTAAGGGGGACCTGA

Upstream 100 bases:

>100_bases
TGCGGCAGATGGTCCGCTGGAAGACGCGCGGCGACTAGTCGCGCTGGACCTCTCCAGCGCATCCCCCTAGGGTCGCGGCG
CGACAGTTTGAGGATATCCA

Downstream 100 bases:

>100_bases
TTATGGCCGATGCCTATGGTGAACTGATGGCCTTCATGCGCGACACCCAAGCGCTGGCCTCCATTGCCGGTCGGCTGGAC
TGGGATCAGGAAACCGTGAT

Product: cytochrome c oxidase assembly protein, putative

Products: NA

Alternate protein names: HAS; Cytochrome aa3-controlling protein

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSSKRKLFEEVGAAAATRPAAQPGLIDKRHSGARKAIRVWLQILFALVFIMIAVGGLTRLTDSGLSITEWRPLTGALPPL
SEAEWQSEFEKYQAIDEFRIQNQWMQMADFKVIYWWEWGHRQLGRVIGVVWALGFGYFLVRRQVPAGWHGKLLFLGLLGG
AQGAIGWWMVASGVTQGEGVTDVASYRLATHLGLAFVILGFIAWYIMELGRSAPDLMQARRIKEGKQWGMSTGLLHFTFL
QILLGALVAGIDAGRSYTDWPMMGGQWFPSTALVLEPIWRNFFESPGLVQFMHRVTGYVLILFTVVVWLRGRRSSHPHTR
FAFNAVLAAMTLQIVLGIVTVLYGAPAHIAIFHQTLAVIVWVLILRARFLSGYPIATSVRGT

Sequences:

>Translated_382_residues
MSSKRKLFEEVGAAAATRPAAQPGLIDKRHSGARKAIRVWLQILFALVFIMIAVGGLTRLTDSGLSITEWRPLTGALPPL
SEAEWQSEFEKYQAIDEFRIQNQWMQMADFKVIYWWEWGHRQLGRVIGVVWALGFGYFLVRRQVPAGWHGKLLFLGLLGG
AQGAIGWWMVASGVTQGEGVTDVASYRLATHLGLAFVILGFIAWYIMELGRSAPDLMQARRIKEGKQWGMSTGLLHFTFL
QILLGALVAGIDAGRSYTDWPMMGGQWFPSTALVLEPIWRNFFESPGLVQFMHRVTGYVLILFTVVVWLRGRRSSHPHTR
FAFNAVLAAMTLQIVLGIVTVLYGAPAHIAIFHQTLAVIVWVLILRARFLSGYPIATSVRGT
>Mature_381_residues
SSKRKLFEEVGAAAATRPAAQPGLIDKRHSGARKAIRVWLQILFALVFIMIAVGGLTRLTDSGLSITEWRPLTGALPPLS
EAEWQSEFEKYQAIDEFRIQNQWMQMADFKVIYWWEWGHRQLGRVIGVVWALGFGYFLVRRQVPAGWHGKLLFLGLLGGA
QGAIGWWMVASGVTQGEGVTDVASYRLATHLGLAFVILGFIAWYIMELGRSAPDLMQARRIKEGKQWGMSTGLLHFTFLQ
ILLGALVAGIDAGRSYTDWPMMGGQWFPSTALVLEPIWRNFFESPGLVQFMHRVTGYVLILFTVVVWLRGRRSSHPHTRF
AFNAVLAAMTLQIVLGIVTVLYGAPAHIAIFHQTLAVIVWVLILRARFLSGYPIATSVRGT

Specific function: Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group

COG id: COG1612

COG function: function code O; Uncharacterized protein required for cytochrome oxidase assembly

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the COX15/CtaA family. Type 2 subfamily

Homologues:

Organism=Homo sapiens, GI17921985, Length=344, Percent_Identity=36.3372093023256, Blast_Score=200, Evalue=2e-51,
Organism=Homo sapiens, GI17921987, Length=317, Percent_Identity=36.2776025236593, Blast_Score=185, Evalue=5e-47,
Organism=Caenorhabditis elegans, GI17536069, Length=341, Percent_Identity=36.3636363636364, Blast_Score=213, Evalue=2e-55,
Organism=Saccharomyces cerevisiae, GI6320989, Length=366, Percent_Identity=36.6120218579235, Blast_Score=207, Evalue=1e-54,
Organism=Drosophila melanogaster, GI19922860, Length=338, Percent_Identity=36.094674556213, Blast_Score=192, Evalue=3e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CTAA_ROSDO (Q165T0)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_682949.1
- STRING:   Q165T0
- GeneID:   4196083
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_2728
- NMPDR:   fig|375451.6.peg.2528
- eggNOG:   COG1612
- HOGENOM:   HBG628966
- OMA:   GLSIVEW
- PhylomeDB:   Q165T0
- ProtClustDB:   CLSK2767268
- BioCyc:   RDEN375451:RD1_2728-MONOMER
- HAMAP:   MF_01665
- InterPro:   IPR003780

Pfam domain/function: PF02628 COX15-CtaA

EC number: NA

Molecular weight: Translated: 42725; Mature: 42594

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: NA

Important sites: BINDING 353-353

Signals:

None

Transmembrane regions:

HASH(0x1ce19134)-; HASH(0x14732c10)-; HASH(0x147336e4)-; HASH(0x14731c50)-; HASH(0x14734638)-; HASH(0x147352b0)-; HASH(0x1472b584)-; HASH(0x14638674)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSKRKLFEEVGAAAATRPAAQPGLIDKRHSGARKAIRVWLQILFALVFIMIAVGGLTRL
CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
TDSGLSITEWRPLTGALPPLSEAEWQSEFEKYQAIDEFRIQNQWMQMADFKVIYWWEWGH
CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCH
RQLGRVIGVVWALGFGYFLVRRQVPAGWHGKLLFLGLLGGAQGAIGWWMVASGVTQGEGV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCH
TDVASYRLATHLGLAFVILGFIAWYIMELGRSAPDLMQARRIKEGKQWGMSTGLLHFTFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
QILLGALVAGIDAGRSYTDWPMMGGQWFPSTALVLEPIWRNFFESPGLVQFMHRVTGYVL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ILFTVVVWLRGRRSSHPHTRFAFNAVLAAMTLQIVLGIVTVLYGAPAHIAIFHQTLAVIV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
WVLILRARFLSGYPIATSVRGT
HHHHHHHHHHCCCCCCCCCCCH
>Mature Secondary Structure 
SSKRKLFEEVGAAAATRPAAQPGLIDKRHSGARKAIRVWLQILFALVFIMIAVGGLTRL
CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
TDSGLSITEWRPLTGALPPLSEAEWQSEFEKYQAIDEFRIQNQWMQMADFKVIYWWEWGH
CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCH
RQLGRVIGVVWALGFGYFLVRRQVPAGWHGKLLFLGLLGGAQGAIGWWMVASGVTQGEGV
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHCCCCCCCCH
TDVASYRLATHLGLAFVILGFIAWYIMELGRSAPDLMQARRIKEGKQWGMSTGLLHFTFL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
QILLGALVAGIDAGRSYTDWPMMGGQWFPSTALVLEPIWRNFFESPGLVQFMHRVTGYVL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ILFTVVVWLRGRRSSHPHTRFAFNAVLAAMTLQIVLGIVTVLYGAPAHIAIFHQTLAVIV
HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
WVLILRARFLSGYPIATSVRGT
HHHHHHHHHHCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA