| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
Click here to switch to the map view.
The map label for this gene is 110679905
Identifier: 110679905
GI number: 110679905
Start: 2557063
End: 2557671
Strand: Direct
Name: 110679905
Synonym: RD1_2683
Alternate gene names: NA
Gene position: 2557063-2557671 (Clockwise)
Preceding gene: 110679901
Following gene: 110679906
Centisome position: 61.87
GC content: 62.56
Gene sequence:
>609_bases ATGCCAGCATCGTCCAAAATACCGATCATTCTTCTGGCGGCGGGCGCGTCGCGCCGGATGCGGGGGGGTGATAAGTTGCT GGAGGAGGTGGACGGTCTCCCCCTGTTGCGCCGACAAACCATGCGGGCCATCAACGCGACAAAGGGCCCTGTGATCGTAA CACTGCCCCCGGAGGGACACGCCCGCAAGGAGGCTTTGACGGGGCTGAAGGTGACAACGGTACCAGTGCCCGACGCAGCG CATGGAATGAGCGTGAGCCTGCGGCGCGGCCTTGCGCAGGTGCCAGTGGATGCCGGTGCGGTGATGGTGCTGCTACCGGA TTTACCGGATCTGACAACTAAAGACCTGGTGGCTGTGTTGGACGCTGCGGACAGAACCAAAGACGCGCTCATCTGGCGGG GAACCACGTCGGATGGCGCTGCTGGCCACCCGATTGTCTTTGCCAGAGCCTTGTTTGCCGAACTGGCGTCGATCAGCGGT GATACGGGCGGCGCATCGGTCGTGGCGCGTCATTCGGACAAGACGTCGTTCATCCGCCTGCCGGGCAATCGCGCACGGTT AGATTTGGACACGCCCGAAGACTGGGCAAAATGGCGCGCATCACAATGA
Upstream 100 bases:
>100_bases TAAATCAACAGGGCGTTGCCACGCATAGCACTTGGTAAATCGAGGTTTACGCTGCAACCTGTAACAGTTTGGTTAATTGG CCTATAGGGAATGGATGAAC
Downstream 100 bases:
>100_bases CGGTGCGGAGCGATGTGGCATTTTTTGCATCTACCGAAAGACGGCGCTTGATCTTGCCACTGGATAAACCTGCGCACCGC AGGAAGTCTCGAGCAAAATT
Product: hypothetical protein
Products: NA
Alternate protein names: Purine Catabolism Protein PucB; Protein Family UPF; Molybdenum Cofactor Cytidylyltransferase; Molybdopterin Biosynthesis; 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase; 4-Diphosphocytidyl-2C-Methyl-D-Erythritolsynthas E; MobA-Like Protein; Molybdenum Cofactor Biosynthesis Protein; L-Seryl-TRNA(Ser) Selenium Transferase Protein; MobA-Like Protein-Like Protein; MobA-Like Protein-Like; Molybdopterin Molybdochelatase
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MPASSKIPIILLAAGASRRMRGGDKLLEEVDGLPLLRRQTMRAINATKGPVIVTLPPEGHARKEALTGLKVTTVPVPDAA HGMSVSLRRGLAQVPVDAGAVMVLLPDLPDLTTKDLVAVLDAADRTKDALIWRGTTSDGAAGHPIVFARALFAELASISG DTGGASVVARHSDKTSFIRLPGNRARLDLDTPEDWAKWRASQ
Sequences:
>Translated_202_residues MPASSKIPIILLAAGASRRMRGGDKLLEEVDGLPLLRRQTMRAINATKGPVIVTLPPEGHARKEALTGLKVTTVPVPDAA HGMSVSLRRGLAQVPVDAGAVMVLLPDLPDLTTKDLVAVLDAADRTKDALIWRGTTSDGAAGHPIVFARALFAELASISG DTGGASVVARHSDKTSFIRLPGNRARLDLDTPEDWAKWRASQ >Mature_201_residues PASSKIPIILLAAGASRRMRGGDKLLEEVDGLPLLRRQTMRAINATKGPVIVTLPPEGHARKEALTGLKVTTVPVPDAAH GMSVSLRRGLAQVPVDAGAVMVLLPDLPDLTTKDLVAVLDAADRTKDALIWRGTTSDGAAGHPIVFARALFAELASISGD TGGASVVARHSDKTSFIRLPGNRARLDLDTPEDWAKWRASQ
Specific function: Unknown
COG id: COG2068
COG function: function code R; Uncharacterized MobA-related protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21361; Mature: 21230
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPASSKIPIILLAAGASRRMRGGDKLLEEVDGLPLLRRQTMRAINATKGPVIVTLPPEGH CCCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCC ARKEALTGLKVTTVPVPDAAHGMSVSLRRGLAQVPVDAGAVMVLLPDLPDLTTKDLVAVL HHHHHHCCCEEEEECCCCCCCCCCHHHHCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHH DAADRTKDALIWRGTTSDGAAGHPIVFARALFAELASISGDTGGASVVARHSDKTSFIRL HHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEE PGNRARLDLDTPEDWAKWRASQ CCCCEEEECCCCHHHHHHCCCC >Mature Secondary Structure PASSKIPIILLAAGASRRMRGGDKLLEEVDGLPLLRRQTMRAINATKGPVIVTLPPEGH CCCCCCCEEEEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCEEEEECCCCC ARKEALTGLKVTTVPVPDAAHGMSVSLRRGLAQVPVDAGAVMVLLPDLPDLTTKDLVAVL HHHHHHCCCEEEEECCCCCCCCCCHHHHCCHHHCCCCCCEEEEEECCCCCCCHHHHHHHH DAADRTKDALIWRGTTSDGAAGHPIVFARALFAELASISGDTGGASVVARHSDKTSFIRL HHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEE PGNRARLDLDTPEDWAKWRASQ CCCCEEEECCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA