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The map label for this gene is ycbB [H]

Identifier: 110679848

GI number: 110679848

Start: 2500244

End: 2501857

Strand: Direct

Name: ycbB [H]

Synonym: RD1_2619

Alternate gene names: 110679848

Gene position: 2500244-2501857 (Clockwise)

Preceding gene: 110679845

Following gene: 110679849

Centisome position: 60.49

GC content: 57.31

Gene sequence:

>1614_bases
ATGATTTCTGCTGTCAGCAGCCGTTTACCCACCGCAGTGCACGTCATCACACTTTTACTGTGGTCAATTTTACCGTCTTC
CGGGTCGGCTGGCACAGAGACCGTCGCGTTCAAGCAAGCCGTCGCAGAGGCGGCCGCGCAGGATCAGGATATCGCGGCGT
TTTACAGGGAAACGGGGTATGATGCGATCTGGACCGGGACAAGTGGTCGCGAACGCAATCGGCGCGCAGCACTCATAGAT
GCGCTGGCCGCGGCGGATGATCATGGTCTTCCGAGTGAACGCTATGGTCTTGGCGCGCTTGAGCAGAAAATGAAAACCGC
GCGCACCCCACGTGACCTGGGTTTGGTTGAGGTCGCGATGAGCCGGGCATTCCTGCAATATGCGCGCGACATACAGACCG
GTGCGCTGGTGCCCTCCCGGGTGGATAAGAACATCGTGCGGCAAGTGCCTTACCGGGATCGAAAATCCTATCTCACCAAC
TTTGCAAAGTCGTCGCCAAAGGGGTTTTTCAAAGCGCTGCCACCGCAAACCGGCGAGTATAACGCGTTGATGAAGCAAAA
GCTTGTCCTTGAAGGGCTGGTTGCAAAGGGCGGCTGGGGTCCGACGGTCAAAGCCAAGAAACTCGAACCCGGCGATCAAG
GCGCATCGGTCGTAGCGCTGCGGGACCGGCTGATCCGGATGGGGTATCTCAAACGCAGTGCCGCCAGTACATATGATGCC
GCCATGACAGCGGCGGTTGTGCGGTTTCAGGCCGATCACGGTCTCGCGCAAGACGGAATCGTCGGGCGGGGCACGCTGGC
GGAAATCAACACCTCAGTTCGCAAACGCCTGCAGGCCGTGATTGTCGCGATGGAGCGCGAGCGCTGGGTCAACAAGGAGC
GCGGCACACGTCATATCGAAGTGAATCTGACGGATTTCACGGCCAAGATCATCGACAAAGGCAAGGTCACCTTCAGTACG
CGCTCCGTGATTGGCGCCCGCGATGCCAAACGTCAGTCTCCCGAGTTTTCCGACGTGATGGAATTCATGGTGATCAACCC
CAGCTGGTTCGTCCCGCGTTCGATTGCAACCGGCGAATACCTGCCGGAACTTCAGCAGGATCCGAATGCGGTGAACCATC
TGATCATCACGGATCGCAGCGGGCGGCAAATCGACCGTGCAAATGTCGATTTCACGAAATATACCGAACGCACGTTTCCT
TACGCCATGCGCCAACCGCCAAGCCGCAGCAATGCGCTGGGGTTGGTAAAGTTCATGTTTCCCAATAAGTACAACATATA
TCTACATGATACGCCTGCAAAAAATCTCTTTGGGCGCGAAACCCGTGCGTACAGTCACGGCTGCATCCGGCTGGCTGATC
CGTTTGAATTTGCCTATGCGCTGCTGGCCAAGCAATCGGGCGATCCCGAGGGTTTGTTCCAGAAAACACTGGCGACCGGG
AAGGAAACGCAGCTTAATCTGAAAAAGCCTGTTCCGGTACATATCATTTACCGCACAGCGGTGGCGGATTCCAAAGGGCG
GATCCAATACCGACGCGACGTCTATGGTCGCGATGGTCGGATTTGGGAAGCGCTCTCACAGGCAGGGGTGGCGTTGCGCG
GCGTTCAGGGCTAA

Upstream 100 bases:

>100_bases
GTTCGGTCGCGTAGGGGGCGAATTTTTCATGGACACCCGGCACGCCCGCCTGCATCGTTAACCATTAAACGCGCGATATT
GTTTATTGAGAGGTACCTTC

Downstream 100 bases:

>100_bases
GTCACACCCGTGGCATCACCGGGAGCATCAGCATGGCGCGTCAGGAATTCAGCGTTGCAGACATCGCGAAAGCCCTTGGC
GCAGAAGCCTTTGGCGAGAC

Product: peptidoglycan binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 537; Mature: 537

Protein sequence:

>537_residues
MISAVSSRLPTAVHVITLLLWSILPSSGSAGTETVAFKQAVAEAAAQDQDIAAFYRETGYDAIWTGTSGRERNRRAALID
ALAAADDHGLPSERYGLGALEQKMKTARTPRDLGLVEVAMSRAFLQYARDIQTGALVPSRVDKNIVRQVPYRDRKSYLTN
FAKSSPKGFFKALPPQTGEYNALMKQKLVLEGLVAKGGWGPTVKAKKLEPGDQGASVVALRDRLIRMGYLKRSAASTYDA
AMTAAVVRFQADHGLAQDGIVGRGTLAEINTSVRKRLQAVIVAMERERWVNKERGTRHIEVNLTDFTAKIIDKGKVTFST
RSVIGARDAKRQSPEFSDVMEFMVINPSWFVPRSIATGEYLPELQQDPNAVNHLIITDRSGRQIDRANVDFTKYTERTFP
YAMRQPPSRSNALGLVKFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRLADPFEFAYALLAKQSGDPEGLFQKTLATG
KETQLNLKKPVPVHIIYRTAVADSKGRIQYRRDVYGRDGRIWEALSQAGVALRGVQG

Sequences:

>Translated_537_residues
MISAVSSRLPTAVHVITLLLWSILPSSGSAGTETVAFKQAVAEAAAQDQDIAAFYRETGYDAIWTGTSGRERNRRAALID
ALAAADDHGLPSERYGLGALEQKMKTARTPRDLGLVEVAMSRAFLQYARDIQTGALVPSRVDKNIVRQVPYRDRKSYLTN
FAKSSPKGFFKALPPQTGEYNALMKQKLVLEGLVAKGGWGPTVKAKKLEPGDQGASVVALRDRLIRMGYLKRSAASTYDA
AMTAAVVRFQADHGLAQDGIVGRGTLAEINTSVRKRLQAVIVAMERERWVNKERGTRHIEVNLTDFTAKIIDKGKVTFST
RSVIGARDAKRQSPEFSDVMEFMVINPSWFVPRSIATGEYLPELQQDPNAVNHLIITDRSGRQIDRANVDFTKYTERTFP
YAMRQPPSRSNALGLVKFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRLADPFEFAYALLAKQSGDPEGLFQKTLATG
KETQLNLKKPVPVHIIYRTAVADSKGRIQYRRDVYGRDGRIWEALSQAGVALRGVQG
>Mature_537_residues
MISAVSSRLPTAVHVITLLLWSILPSSGSAGTETVAFKQAVAEAAAQDQDIAAFYRETGYDAIWTGTSGRERNRRAALID
ALAAADDHGLPSERYGLGALEQKMKTARTPRDLGLVEVAMSRAFLQYARDIQTGALVPSRVDKNIVRQVPYRDRKSYLTN
FAKSSPKGFFKALPPQTGEYNALMKQKLVLEGLVAKGGWGPTVKAKKLEPGDQGASVVALRDRLIRMGYLKRSAASTYDA
AMTAAVVRFQADHGLAQDGIVGRGTLAEINTSVRKRLQAVIVAMERERWVNKERGTRHIEVNLTDFTAKIIDKGKVTFST
RSVIGARDAKRQSPEFSDVMEFMVINPSWFVPRSIATGEYLPELQQDPNAVNHLIITDRSGRQIDRANVDFTKYTERTFP
YAMRQPPSRSNALGLVKFMFPNKYNIYLHDTPAKNLFGRETRAYSHGCIRLADPFEFAYALLAKQSGDPEGLFQKTLATG
KETQLNLKKPVPVHIIYRTAVADSKGRIQYRRDVYGRDGRIWEALSQAGVALRGVQG

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=398, Percent_Identity=29.1457286432161, Blast_Score=164, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 59558; Mature: 59558

Theoretical pI: Translated: 10.41; Mature: 10.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISAVSSRLPTAVHVITLLLWSILPSSGSAGTETVAFKQAVAEAAAQDQDIAAFYRETGY
CCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCC
DAIWTGTSGRERNRRAALIDALAAADDHGLPSERYGLGALEQKMKTARTPRDLGLVEVAM
CEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
SRAFLQYARDIQTGALVPSRVDKNIVRQVPYRDRKSYLTNFAKSSPKGFFKALPPQTGEY
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCH
NALMKQKLVLEGLVAKGGWGPTVKAKKLEPGDQGASVVALRDRLIRMGYLKRSAASTYDA
HHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCHHHH
AMTAAVVRFQADHGLAQDGIVGRGTLAEINTSVRKRLQAVIVAMERERWVNKERGTRHIE
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VNLTDFTAKIIDKGKVTFSTRSVIGARDAKRQSPEFSDVMEFMVINPSWFVPRSIATGEY
EEEHHHHHHHHCCCCEEEEHHHHHCCCHHHCCCCCHHHHHHHHEECCCCCCCCCCCCCHH
LPELQQDPNAVNHLIITDRSGRQIDRANVDFTKYTERTFPYAMRQPPSRSNALGLVKFMF
CHHHHCCCCHHCEEEEECCCCCEECCCCCCHHHHHHCCCCHHHCCCCCCCCCEEEEEEEC
PNKYNIYLHDTPAKNLFGRETRAYSHGCIRLADPFEFAYALLAKQSGDPEGLFQKTLATG
CCCEEEEEECCCCHHHCCCHHHHHCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCC
KETQLNLKKPVPVHIIYRTAVADSKGRIQYRRDVYGRDGRIWEALSQAGVALRGVQG
CCCEEECCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHCCCEEECCCC
>Mature Secondary Structure
MISAVSSRLPTAVHVITLLLWSILPSSGSAGTETVAFKQAVAEAAAQDQDIAAFYRETGY
CCCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCC
DAIWTGTSGRERNRRAALIDALAAADDHGLPSERYGLGALEQKMKTARTPRDLGLVEVAM
CEEEECCCCCCCCHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
SRAFLQYARDIQTGALVPSRVDKNIVRQVPYRDRKSYLTNFAKSSPKGFFKALPPQTGEY
HHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCH
NALMKQKLVLEGLVAKGGWGPTVKAKKLEPGDQGASVVALRDRLIRMGYLKRSAASTYDA
HHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHCCHHHH
AMTAAVVRFQADHGLAQDGIVGRGTLAEINTSVRKRLQAVIVAMERERWVNKERGTRHIE
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
VNLTDFTAKIIDKGKVTFSTRSVIGARDAKRQSPEFSDVMEFMVINPSWFVPRSIATGEY
EEEHHHHHHHHCCCCEEEEHHHHHCCCHHHCCCCCHHHHHHHHEECCCCCCCCCCCCCHH
LPELQQDPNAVNHLIITDRSGRQIDRANVDFTKYTERTFPYAMRQPPSRSNALGLVKFMF
CHHHHCCCCHHCEEEEECCCCCEECCCCCCHHHHHHCCCCHHHCCCCCCCCCEEEEEEEC
PNKYNIYLHDTPAKNLFGRETRAYSHGCIRLADPFEFAYALLAKQSGDPEGLFQKTLATG
CCCEEEEEECCCCHHHCCCHHHHHCCCEEEECCHHHHHHHHHHHCCCCHHHHHHHHHHCC
KETQLNLKKPVPVHIIYRTAVADSKGRIQYRRDVYGRDGRIWEALSQAGVALRGVQG
CCCEEECCCCCCEEEEEEEEECCCCCCEEEECCCCCCCCHHHHHHHHCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]