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The map label for this gene is ycbK [H]

Identifier: 110679846

GI number: 110679846

Start: 2499362

End: 2499931

Strand: Reverse

Name: ycbK [H]

Synonym: RD1_2617

Alternate gene names: 110679846

Gene position: 2499931-2499362 (Counterclockwise)

Preceding gene: 110679847

Following gene: 110679842

Centisome position: 60.49

GC content: 58.77

Gene sequence:

>570_bases
ATGACCATCGAAAATCCAACGGGTTTTTCCCGACGCGCCCTATTGGGCGCATTTGCAGCGACAATGGTAACTGCAGCTCC
AACTTTCTCAAACGCCGCAGGTTTCCTGCGAGGCTCCGGCGATATTCGCCGCATCCGCATGTATTCCGGGCGCACGGGCG
AACGCATCGACATGATCTACTGGATCGAGGGCGAATACGTCCCCGAAGCGGTTAAAGAGGTCAATCACTTCATGCGCGAC
TGGCGCACGGACGGTGTGAAGTCCATGGATCTGCGCACCATCGACATCATGTCGGCGGCGCATAATCTGATGGACGCGGA
TGAGCCCTATATGCTGTTGTCTGGCTATCGCAGCCCGCAGACAAACGCCATGCTGCGATCGCGCAGCAGAGGCGTTGCAA
AGAATTCGCTGCACGTCAAAGGTCAGGCAGCAGATTTGCGCCTCTCCACCCGCACTGTCAGCCAGATGGCCCGCGCGGCG
GCGGCCTGCAAAGGCGGCGGCGTTGGAAAATACAGCCGATCCAATTTTGTTCATATGGATTGCGGCGTCGTGCGCACCTG
GGGCCGCTGA

Upstream 100 bases:

>100_bases
GTTAATATTACGCCATATGACATAAATCGGGAACATCTGGGGAAGAGATGAAACGCCTGTGTAACATCATGGGCCAGGCA
GGAATAGCGACGGACAGGTT

Downstream 100 bases:

>100_bases
GGCCGCGCAGGACTAAATCATGCCTGATCCGCGTTGGTAACGACCGGCGTGGGCGCACCCGGCAAATCGCAAATCTCTTC
GGACCCGGTAAAAAAGCAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MTIENPTGFSRRALLGAFAATMVTAAPTFSNAAGFLRGSGDIRRIRMYSGRTGERIDMIYWIEGEYVPEAVKEVNHFMRD
WRTDGVKSMDLRTIDIMSAAHNLMDADEPYMLLSGYRSPQTNAMLRSRSRGVAKNSLHVKGQAADLRLSTRTVSQMARAA
AACKGGGVGKYSRSNFVHMDCGVVRTWGR

Sequences:

>Translated_189_residues
MTIENPTGFSRRALLGAFAATMVTAAPTFSNAAGFLRGSGDIRRIRMYSGRTGERIDMIYWIEGEYVPEAVKEVNHFMRD
WRTDGVKSMDLRTIDIMSAAHNLMDADEPYMLLSGYRSPQTNAMLRSRSRGVAKNSLHVKGQAADLRLSTRTVSQMARAA
AACKGGGVGKYSRSNFVHMDCGVVRTWGR
>Mature_188_residues
TIENPTGFSRRALLGAFAATMVTAAPTFSNAAGFLRGSGDIRRIRMYSGRTGERIDMIYWIEGEYVPEAVKEVNHFMRDW
RTDGVKSMDLRTIDIMSAAHNLMDADEPYMLLSGYRSPQTNAMLRSRSRGVAKNSLHVKGQAADLRLSTRTVSQMARAAA
ACKGGGVGKYSRSNFVHMDCGVVRTWGR

Specific function: Unknown

COG id: COG3108

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1666 [H]

Homologues:

Organism=Escherichia coli, GI1787157, Length=136, Percent_Identity=44.1176470588235, Blast_Score=122, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010275
- InterPro:   IPR009045
- InterPro:   IPR006311 [H]

Pfam domain/function: PF05951 Peptidase_M15_2 [H]

EC number: NA

Molecular weight: Translated: 20919; Mature: 20788

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIENPTGFSRRALLGAFAATMVTAAPTFSNAAGFLRGSGDIRRIRMYSGRTGERIDMIY
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEEE
WIEGEYVPEAVKEVNHFMRDWRTDGVKSMDLRTIDIMSAAHNLMDADEPYMLLSGYRSPQ
EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
TNAMLRSRSRGVAKNSLHVKGQAADLRLSTRTVSQMARAAAACKGGGVGKYSRSNFVHMD
HHHHHHHHCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
CGVVRTWGR
CCEEEECCC
>Mature Secondary Structure 
TIENPTGFSRRALLGAFAATMVTAAPTFSNAAGFLRGSGDIRRIRMYSGRTGERIDMIY
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEECCCCCCEEEEEE
WIEGEYVPEAVKEVNHFMRDWRTDGVKSMDLRTIDIMSAAHNLMDADEPYMLLSGYRSPQ
EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC
TNAMLRSRSRGVAKNSLHVKGQAADLRLSTRTVSQMARAAAACKGGGVGKYSRSNFVHMD
HHHHHHHHCCCCCCCCEEECCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEC
CGVVRTWGR
CCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]