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The map label for this gene is omp85 [H]

Identifier: 110679823

GI number: 110679823

Start: 2475883

End: 2478213

Strand: Direct

Name: omp85 [H]

Synonym: RD1_2593

Alternate gene names: 110679823

Gene position: 2475883-2478213 (Clockwise)

Preceding gene: 110679822

Following gene: 110679824

Centisome position: 59.9

GC content: 57.79

Gene sequence:

>2331_bases
GTGCAGGGCGCGACGCGCCGCACTTTCATAAAACCATTGCGGGCCGGGGCCTTTTGTCTGGCGATATCAGCAACTTGGAT
TGCGCCAAGCGGGGTCGCACTGGCGCAACAGATCGCAATCAACACCGTCAACATCGAGGGGAACGCGCGGATCGGGGATT
CCGCGATCCTGTCACGGGCTGGTATTGTGCCCGGTCAGAGCATTTCCGCCGGTGAACTGAATGCCGGCCTTCAGAGGCTG
CAGGACTCCGGTCTTTTTGAAAGTGTTGATTTTGAGCCACGGGGAAATGCACTCAACATCACCGTGGTGGAGTATCCGAC
GATCAACCGGATCAACTTTGAAGGCAATGCCCGGATCGGTGATGAAACACTGGCTGCCGCCATCGGTTCCAATGAACGCA
GGGTCTTCAACCCGGCGCAGGCGGAACGGGACGCGGCGCTGATCGCCGACGCCTATGCATCGGAGGGCCGCATCGCTGCC
AGGGTGACACCCACGATCATCCGCCGCTCTGACAACCGGGTTGATTTGATTTTCGAGATTTTCGAAGGTGACAATATCGA
AATCGAACGCCTGAGCTTTACCGGAAACCGTGTTTATTCCGACAGACGCCTGCGCCGGGTCCTCGAAACGAAACAGGCGG
GATTGTTCCGCGCCTTTGTGCGCAGTGACACGCTGGTTGAGGATCGGATCGAATTTGACCGGCAGGTTTTGCGCGATTTC
TACCTGTCGCGGGGCTATGTTGATTTTCGCACCAATTCGGTCAACGCGGAGTTGACCGAAGAACGCGATGGCTACTTCCT
TGTATTCGATGTGCAGGAGGGTCAGCAATTCCGGGTCGGCGAGATTACCGTCGCAAGCGAGCTGGCCGAAGCCGACAGCG
ATCTATACCGCGAGACGGTCAAAACGCGCAGCGGTGTGGTCTATTCGCCCACGCTGATCGAGGCGGACATTGCCAGAATG
GAACGTCAAGCGATCATTGATGGCGTGGATTTCATGCGGGTCGAGCCGCGCATCACGCGCGACGAGCGCAATCTGACGAT
CAACGTTGAATATGTGCTGACCCGCGGTCCCAGAGTGTTTGTCGAGCGGATTGATATCGAAGGCAACACCACCACGCTGG
ATCAGGTGATCCGCCGGCAATTCAACAGCGTGGAGGGCGACCCTTTCAACCCCCGCGAAATCCGCGAATCCGCTGAACGC
ATCCGTGCGCTTGGCTTCTTTTCCGCGGCAGAGGTGAACGCGCGGGAGGGATCTTCACCGGATCAGGTGATCGTGGATGT
CGATGTCGAAGAGCAGCCGACCGGGTCACTGTCCTTTGGTGCGTCCTTTTCGACCAACGATGGTATCGGTTTTGCGATCC
AGTTCACGGAACGGAACTTCCTTGGGCGGGGCCAGCGGCTCGGTTTGACGCTGTCAACGGCAGAAGATGATCAACTTTAC
CGGGTCAACTTTTTCGAACCGGCATTTCTGGGGCGGGATGTCGGCTTCGGGCTGCGGCTTGATGTTTCGGAAAGCACGAG
TTCAACAGTGACATACGACACAGATCGCGCGGTGCTGACACCGTCGCTCAGCTTTCCGGTCGGGGCGAACTCGCGTCTTG
AGTTGAATTACAAATACGACCAGTCGGAAATGAAGGATCGCGGTAGCGATTCTGATAATGGCCCGATCATTGGCCGCGAT
ATTGACGAGGGTGAGCTCGTCAACAGCTCCATCGGGTACCGGTATGTCTACGATTCACGCACGACGGGTCTGGACCCGAC
GGCCGGGTATCTGTTCGAGTTCGGACAGGATTTTGCGGGTGTCGGCGGGGACAACACCTTTATCCGTACCAGCGCCAAAG
TTGTGGGTGAGCGTAAAATATTCAACGAAGACGTGACGTTGCGCGCCACTCTCGAAGGCGGGGCCTTGAACTATCAAAGT
GGTGCCAACCGGGCGGTTGACAGGTTCCTGCTATCCACGAACACGATCCGCGGCTTTGAGCCGGGCGGGATCGGCCCACG
CGATTTGTCGGAATCCAACGAAGACCCCTTGGGCGGCAACCTCTTTGTTGCGGCGCGCTTTGAAGCGGAGTTTCCCGTCG
GACTGCCTGAGGAATATGGCATCACGGGCGGCCTGTTCTATGATGTGGGCAACCTGTGGGATCTGAATGACGTTGACCTG
AGCGGCGGCAGGGTCGTCGGCGAGAGCGGGTCGTTCCGCCATGTCATCGGCGTGTCCGTTTTGTGGGAAACGCCTGTTGG
CCCGCTGCGGTTCAACTTTTCCGATGCGATCCGCAAGGAAGATTTTGACCGCGAACAGACCTTCGAAGTCACCGTCAACA
CAACCTTCTGA

Upstream 100 bases:

>100_bases
CATGGTTTTGACAAGTGGGGCCAAAATCGGTACTCAGAATATAATAAAATTCTGAGGGTCGAGGCAGATCATGAAACCGG
GCATAACTGGCGCGCAAGGC

Downstream 100 bases:

>100_bases
TTTGTGATGCACCTGCGCCCGCTTGTTTACGGTTTGGCGTTTGCGGCGGTCTGTGCATTTTCTGCGCAGGGCCAGCCGCT
GGTGCGGGCGCCGGTTGAAA

Product: outer membrane protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 776; Mature: 776

Protein sequence:

>776_residues
MQGATRRTFIKPLRAGAFCLAISATWIAPSGVALAQQIAINTVNIEGNARIGDSAILSRAGIVPGQSISAGELNAGLQRL
QDSGLFESVDFEPRGNALNITVVEYPTINRINFEGNARIGDETLAAAIGSNERRVFNPAQAERDAALIADAYASEGRIAA
RVTPTIIRRSDNRVDLIFEIFEGDNIEIERLSFTGNRVYSDRRLRRVLETKQAGLFRAFVRSDTLVEDRIEFDRQVLRDF
YLSRGYVDFRTNSVNAELTEERDGYFLVFDVQEGQQFRVGEITVASELAEADSDLYRETVKTRSGVVYSPTLIEADIARM
ERQAIIDGVDFMRVEPRITRDERNLTINVEYVLTRGPRVFVERIDIEGNTTTLDQVIRRQFNSVEGDPFNPREIRESAER
IRALGFFSAAEVNAREGSSPDQVIVDVDVEEQPTGSLSFGASFSTNDGIGFAIQFTERNFLGRGQRLGLTLSTAEDDQLY
RVNFFEPAFLGRDVGFGLRLDVSESTSSTVTYDTDRAVLTPSLSFPVGANSRLELNYKYDQSEMKDRGSDSDNGPIIGRD
IDEGELVNSSIGYRYVYDSRTTGLDPTAGYLFEFGQDFAGVGGDNTFIRTSAKVVGERKIFNEDVTLRATLEGGALNYQS
GANRAVDRFLLSTNTIRGFEPGGIGPRDLSESNEDPLGGNLFVAARFEAEFPVGLPEEYGITGGLFYDVGNLWDLNDVDL
SGGRVVGESGSFRHVIGVSVLWETPVGPLRFNFSDAIRKEDFDREQTFEVTVNTTF

Sequences:

>Translated_776_residues
MQGATRRTFIKPLRAGAFCLAISATWIAPSGVALAQQIAINTVNIEGNARIGDSAILSRAGIVPGQSISAGELNAGLQRL
QDSGLFESVDFEPRGNALNITVVEYPTINRINFEGNARIGDETLAAAIGSNERRVFNPAQAERDAALIADAYASEGRIAA
RVTPTIIRRSDNRVDLIFEIFEGDNIEIERLSFTGNRVYSDRRLRRVLETKQAGLFRAFVRSDTLVEDRIEFDRQVLRDF
YLSRGYVDFRTNSVNAELTEERDGYFLVFDVQEGQQFRVGEITVASELAEADSDLYRETVKTRSGVVYSPTLIEADIARM
ERQAIIDGVDFMRVEPRITRDERNLTINVEYVLTRGPRVFVERIDIEGNTTTLDQVIRRQFNSVEGDPFNPREIRESAER
IRALGFFSAAEVNAREGSSPDQVIVDVDVEEQPTGSLSFGASFSTNDGIGFAIQFTERNFLGRGQRLGLTLSTAEDDQLY
RVNFFEPAFLGRDVGFGLRLDVSESTSSTVTYDTDRAVLTPSLSFPVGANSRLELNYKYDQSEMKDRGSDSDNGPIIGRD
IDEGELVNSSIGYRYVYDSRTTGLDPTAGYLFEFGQDFAGVGGDNTFIRTSAKVVGERKIFNEDVTLRATLEGGALNYQS
GANRAVDRFLLSTNTIRGFEPGGIGPRDLSESNEDPLGGNLFVAARFEAEFPVGLPEEYGITGGLFYDVGNLWDLNDVDL
SGGRVVGESGSFRHVIGVSVLWETPVGPLRFNFSDAIRKEDFDREQTFEVTVNTTF
>Mature_776_residues
MQGATRRTFIKPLRAGAFCLAISATWIAPSGVALAQQIAINTVNIEGNARIGDSAILSRAGIVPGQSISAGELNAGLQRL
QDSGLFESVDFEPRGNALNITVVEYPTINRINFEGNARIGDETLAAAIGSNERRVFNPAQAERDAALIADAYASEGRIAA
RVTPTIIRRSDNRVDLIFEIFEGDNIEIERLSFTGNRVYSDRRLRRVLETKQAGLFRAFVRSDTLVEDRIEFDRQVLRDF
YLSRGYVDFRTNSVNAELTEERDGYFLVFDVQEGQQFRVGEITVASELAEADSDLYRETVKTRSGVVYSPTLIEADIARM
ERQAIIDGVDFMRVEPRITRDERNLTINVEYVLTRGPRVFVERIDIEGNTTTLDQVIRRQFNSVEGDPFNPREIRESAER
IRALGFFSAAEVNAREGSSPDQVIVDVDVEEQPTGSLSFGASFSTNDGIGFAIQFTERNFLGRGQRLGLTLSTAEDDQLY
RVNFFEPAFLGRDVGFGLRLDVSESTSSTVTYDTDRAVLTPSLSFPVGANSRLELNYKYDQSEMKDRGSDSDNGPIIGRD
IDEGELVNSSIGYRYVYDSRTTGLDPTAGYLFEFGQDFAGVGGDNTFIRTSAKVVGERKIFNEDVTLRATLEGGALNYQS
GANRAVDRFLLSTNTIRGFEPGGIGPRDLSESNEDPLGGNLFVAARFEAEFPVGLPEEYGITGGLFYDVGNLWDLNDVDL
SGGRVVGESGSFRHVIGVSVLWETPVGPLRFNFSDAIRKEDFDREQTFEVTVNTTF

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=816, Percent_Identity=24.7549019607843, Blast_Score=213, Evalue=5e-56,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 85944; Mature: 85944

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.6 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQGATRRTFIKPLRAGAFCLAISATWIAPSGVALAQQIAINTVNIEGNARIGDSAILSRA
CCCCCHHHHHHHHHCCEEEEEEEEEEECCCCHHHEEEEEEEEEEECCCCCCCCHHHHHHC
GIVPGQSISAGELNAGLQRLQDSGLFESVDFEPRGNALNITVVEYPTINRINFEGNARIG
CCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
DETLAAAIGSNERRVFNPAQAERDAALIADAYASEGRIAARVTPTIIRRSDNRVDLIFEI
HHHHHHHHCCCCCEEECCHHHCCCCEEEEEHHCCCCEEEEEECCEEEECCCCCEEEEEEE
FEGDNIEIERLSFTGNRVYSDRRLRRVLETKQAGLFRAFVRSDTLVEDRIEFDRQVLRDF
ECCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YLSRGYVDFRTNSVNAELTEERDGYFLVFDVQEGQQFRVGEITVASELAEADSDLYRETV
HHHCCEEEEECCCCCCEEECCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
KTRSGVVYSPTLIEADIARMERQAIIDGVDFMRVEPRITRDERNLTINVEYVLTRGPRVF
HHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCEEEEEEEEEECCCEEE
VERIDIEGNTTTLDQVIRRQFNSVEGDPFNPREIRESAERIRALGFFSAAEVNAREGSSP
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCEEHEECCCCCCCCC
DQVIVDVDVEEQPTGSLSFGASFSTNDGIGFAIQFTERNFLGRGQRLGLTLSTAEDDQLY
CEEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCEE
RVNFFEPAFLGRDVGFGLRLDVSESTSSTVTYDTDRAVLTPSLSFPVGANSRLELNYKYD
EEECCCHHHCCCCCCCEEEEEECCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEEECC
QSEMKDRGSDSDNGPIIGRDIDEGELVNSSIGYRYVYDSRTTGLDPTAGYLFEFGQDFAG
HHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEECCCCCCCCCCHHHHHHHCCHHCC
VGGDNTFIRTSAKVVGERKIFNEDVTLRATLEGGALNYQSGANRAVDRFLLSTNTIRGFE
CCCCCCEEEEHHHHHCCHHEECCCEEEEEEECCCEEECCCCCCHHHHHHHHCCCCCCCCC
PGGIGPRDLSESNEDPLGGNLFVAARFEAEFPVGLPEEYGITGGLFYDVGNLWDLNDVDL
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCC
SGGRVVGESGSFRHVIGVSVLWETPVGPLRFNFSDAIRKEDFDREQTFEVTVNTTF
CCCEEECCCCCEEEEEEEEEEEECCCCCEEECHHHHHHHCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MQGATRRTFIKPLRAGAFCLAISATWIAPSGVALAQQIAINTVNIEGNARIGDSAILSRA
CCCCCHHHHHHHHHCCEEEEEEEEEEECCCCHHHEEEEEEEEEEECCCCCCCCHHHHHHC
GIVPGQSISAGELNAGLQRLQDSGLFESVDFEPRGNALNITVVEYPTINRINFEGNARIG
CCCCCCCCCCCHHHHHHHHHHHCCCEEECCCCCCCCEEEEEEEECCCCEEEEECCCCCCC
DETLAAAIGSNERRVFNPAQAERDAALIADAYASEGRIAARVTPTIIRRSDNRVDLIFEI
HHHHHHHHCCCCCEEECCHHHCCCCEEEEEHHCCCCEEEEEECCEEEECCCCCEEEEEEE
FEGDNIEIERLSFTGNRVYSDRRLRRVLETKQAGLFRAFVRSDTLVEDRIEFDRQVLRDF
ECCCCEEEEEEEECCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
YLSRGYVDFRTNSVNAELTEERDGYFLVFDVQEGQQFRVGEITVASELAEADSDLYRETV
HHHCCEEEEECCCCCCEEECCCCCEEEEEECCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
KTRSGVVYSPTLIEADIARMERQAIIDGVDFMRVEPRITRDERNLTINVEYVLTRGPRVF
HHCCCEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCEEEEEEEEEECCCEEE
VERIDIEGNTTTLDQVIRRQFNSVEGDPFNPREIRESAERIRALGFFSAAEVNAREGSSP
EEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCEEHEECCCCCCCCC
DQVIVDVDVEEQPTGSLSFGASFSTNDGIGFAIQFTERNFLGRGQRLGLTLSTAEDDQLY
CEEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEECCCCCCEE
RVNFFEPAFLGRDVGFGLRLDVSESTSSTVTYDTDRAVLTPSLSFPVGANSRLELNYKYD
EEECCCHHHCCCCCCCEEEEEECCCCCCEEEEECCCEEEECCCCCCCCCCCEEEEEEECC
QSEMKDRGSDSDNGPIIGRDIDEGELVNSSIGYRYVYDSRTTGLDPTAGYLFEFGQDFAG
HHHHHHCCCCCCCCCEEECCCCCCCEECCCCCEEEEECCCCCCCCCCHHHHHHHCCHHCC
VGGDNTFIRTSAKVVGERKIFNEDVTLRATLEGGALNYQSGANRAVDRFLLSTNTIRGFE
CCCCCCEEEEHHHHHCCHHEECCCEEEEEEECCCEEECCCCCCHHHHHHHHCCCCCCCCC
PGGIGPRDLSESNEDPLGGNLFVAARFEAEFPVGLPEEYGITGGLFYDVGNLWDLNDVDL
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCHHCCCCCEEEEECCCCCCCCCCCC
SGGRVVGESGSFRHVIGVSVLWETPVGPLRFNFSDAIRKEDFDREQTFEVTVNTTF
CCCEEECCCCCEEEEEEEEEEEECCCCCEEECHHHHHHHCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]