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The map label for this gene is ssb [H]

Identifier: 110679808

GI number: 110679808

Start: 2461914

End: 2462414

Strand: Reverse

Name: ssb [H]

Synonym: RD1_2575

Alternate gene names: 110679808

Gene position: 2462414-2461914 (Counterclockwise)

Preceding gene: 110679810

Following gene: 110679807

Centisome position: 59.58

GC content: 61.08

Gene sequence:

>501_bases
ATGGCCGGCTCTGTAAACAAAGTAATCCTTATCGGCAATCTGGGGCGTGACCCTGAGGTCCGCAGCTTTCAGAACGGCGG
CAAAGTGTGCAACCTGCGGATTGCCACCTCCGAAACGTGGAAAGACCGCAACACCGGCGAGCGTAAGGAACGTACCGAGT
GGCATTCGGTGGCCATTTTCTCTGAACCCCTTGCGCGCGTGGCCGAACAGTATCTGCGCAAGGGCTCCAAAGTGTACCTT
GAGGGGCAGCTGGAGACGCGCAAGTGGCAGGATCAATCCGGGCAGGATCGCTATTCCACCGAAGTTGTGCTGCGGCCGTA
CTCGTCCACGCTGACCATGCTTGACGGTCGCGACTCCGGCGGGGGTGGCGGGAACTACGGAGGCGGCGGCGGTGGTGGCC
AGATGGGTTATGACGACCGTGGCGGCGACAGTTACGGTGGCGGTGGAAACGCGCCAAGCCCGGCACCTTCGCGCGATCTG
GATGATGAAATTCCGTTCTGA

Upstream 100 bases:

>100_bases
CCACGAAACAACTATGGTTTTACAAAATTTTTCTGCGTTAAGATTCGGCAAATCCGTTGATCCGCGCAGCGCCATAAGAA
CGAGCAATAAAGGGGGCATC

Downstream 100 bases:

>100_bases
TGCGTATTATGGCGGGCGAAGCGGCGTTGAGCAGATAAAAACACGCACTGTGATGCGTATGTCAGGTTTGGCGCGATACG
CGCGGACCGCTTGCCTTTGT

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFSEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSGGGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDL
DDEIPF

Sequences:

>Translated_166_residues
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFSEPLARVAEQYLRKGSKVYL
EGQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSGGGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDL
DDEIPF
>Mature_165_residues
AGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFSEPLARVAEQYLRKGSKVYLE
GQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSGGGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDLD
DEIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=108, Percent_Identity=31.4814814814815, Blast_Score=71, Evalue=5e-13,
Organism=Escherichia coli, GI1790494, Length=175, Percent_Identity=53.1428571428571, Blast_Score=159, Evalue=1e-40,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 17938; Mature: 17807

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIF
CCCCCCEEEEEECCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHEEEHH
SEPLARVAEQYLRKGSKVYLEGQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSG
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
GGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDLDDEIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIF
CCCCCEEEEEECCCCCCCCHHHCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHEEEHH
SEPLARVAEQYLRKGSKVYLEGQLETRKWQDQSGQDRYSTEVVLRPYSSTLTMLDGRDSG
HHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCC
GGGGNYGGGGGGGQMGYDDRGGDSYGGGGNAPSPAPSRDLDDEIPF
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA