Click here to switch to the map view.

The map label for this gene is 110679796

Identifier: 110679796

GI number: 110679796

Start: 2449417

End: 2449821

Strand: Direct

Name: 110679796

Synonym: RD1_2560

Alternate gene names: NA

Gene position: 2449417-2449821 (Clockwise)

Preceding gene: 110679792

Following gene: 110679797

Centisome position: 59.26

GC content: 58.27

Gene sequence:

>405_bases
ATGAGTAAGGCGCGTCAACTGGGCGATTTCGAGGGGTCATGGACCCTTTCGCGACGCATCATGCCGCGGCGTGGCGCGGG
GGCGGTTTTTGAGGGCACGGCCATCTGGTCGCGCGCCCATGGTGGTCTTCGCTATGTTGAAAAGGGTCTGATGCAGATCG
ACGGGCAGGCGGGCATGCAGGCAGAGCGGCGGTATTTCTGGTCCGGCGAGCTATCGGTATTCTTCGAAGATGGTCGGTTT
TTCCACAACGTTCCGCCCCATGGCGGAGAGACCGAACACTGGTGTGACCCGGACACCTACAAAGGCATCTATGATTTTAC
GCGCTGGCCGCAGTTTGAGGTAACGTGGCAAGTCACGGGGCCGAAAAAGGACTATCTGTCAAAAACCCTTTATACCCGCG
CATAG

Upstream 100 bases:

>100_bases
GGCAGGAGCGGCAAAATGCGGGGTCTTTGGTCAGCTTTGATCTGTGGCAGCACCGGGGTGCGGGGCAGGTCGGTGGATCG
GGTCAGGGCGACAGATGCAG

Downstream 100 bases:

>100_bases
CGTTTGTGCCCTTGCGCGGCGCGCGCACCTGCGGCATTCAGGGGCAACGACATTCTAAACAGGAGACATCAACCGATGCA
AATGTCCGCTTCTCATTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 134; Mature: 133

Protein sequence:

>134_residues
MSKARQLGDFEGSWTLSRRIMPRRGAGAVFEGTAIWSRAHGGLRYVEKGLMQIDGQAGMQAERRYFWSGELSVFFEDGRF
FHNVPPHGGETEHWCDPDTYKGIYDFTRWPQFEVTWQVTGPKKDYLSKTLYTRA

Sequences:

>Translated_134_residues
MSKARQLGDFEGSWTLSRRIMPRRGAGAVFEGTAIWSRAHGGLRYVEKGLMQIDGQAGMQAERRYFWSGELSVFFEDGRF
FHNVPPHGGETEHWCDPDTYKGIYDFTRWPQFEVTWQVTGPKKDYLSKTLYTRA
>Mature_133_residues
SKARQLGDFEGSWTLSRRIMPRRGAGAVFEGTAIWSRAHGGLRYVEKGLMQIDGQAGMQAERRYFWSGELSVFFEDGRFF
HNVPPHGGETEHWCDPDTYKGIYDFTRWPQFEVTWQVTGPKKDYLSKTLYTRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15533; Mature: 15401

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKARQLGDFEGSWTLSRRIMPRRGAGAVFEGTAIWSRAHGGLRYVEKGLMQIDGQAGMQ
CCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCHHHHCCCCHHHHHHHHHEECCCCCCC
AERRYFWSGELSVFFEDGRFFHNVPPHGGETEHWCDPDTYKGIYDFTRWPQFEVTWQVTG
CCCEEEECCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECC
PKKDYLSKTLYTRA
CCHHHHHHHHHCCC
>Mature Secondary Structure 
SKARQLGDFEGSWTLSRRIMPRRGAGAVFEGTAIWSRAHGGLRYVEKGLMQIDGQAGMQ
CCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCHHHHCCCCHHHHHHHHHEECCCCCCC
AERRYFWSGELSVFFEDGRFFHNVPPHGGETEHWCDPDTYKGIYDFTRWPQFEVTWQVTG
CCCEEEECCCEEEEEECCCEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEEECC
PKKDYLSKTLYTRA
CCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA