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The map label for this gene is yegE [C]

Identifier: 110679769

GI number: 110679769

Start: 2418813

End: 2419808

Strand: Direct

Name: yegE [C]

Synonym: RD1_2532

Alternate gene names: 110679769

Gene position: 2418813-2419808 (Clockwise)

Preceding gene: 110679768

Following gene: 110679776

Centisome position: 58.52

GC content: 56.02

Gene sequence:

>996_bases
ATGAGCGGTGATTTGTGTCAAGAGATGCTGAACGTGCTGTGCCCGATGCACATCGTCTTCAATGACAAGGGTGAAATGAC
CTCTTGTGGTCCGACGGCACTGAAGATCTTTCCCGGTGGGCTGATCGGACGAGGCTTTCTCGATGTATTTCACATCAAAA
GGCCCAGAAAGATATCCACACTGGACGCACTGATGGGGCAGACCGGTGTGCGACTAAACCTGCAATTCCGCGACATGCCC
GACAGCCAGCTGCAAGGGGTGGTCATGCCGGGCCCGGTGGCTGGGGATATGGTCGTCAACCTGTCTTTCGGCATCTCCAT
TGTGGATGCGGTCAGTGACTATAACCTCACCGCTGCCGATTTCGCAGCAACGGATCTGACGGTTGAGATGCTGTATCTGG
TCGAAGCGAAATCCGCGGCGATGGAAGCGTCACGTCGCCTGAACGAAAGGTTGCAGGTCGCGCGTGTCGAGGCGGAGGAA
CTGGCTTTGACCGACACGCTCACCGGCCTGAAAAACCGGCGCGCGTTGGATCAGGAACTTTCTGCGCTTCTGCATCAGGG
TACGCCCTTTGCGTTGATGCACATCGATCTGGATTTCTTCAAGGCGGTGAATGATACCCTCGGGCATGCGGCGGGCGATT
ACGTACTGCAACGCGTGGCCGCCATCATGAACCATGAGACACGTAAAGTAGACGTGGTCGCACGGGTTGGGGGTGATGAA
TTTGTGATTCTCATCAAGGGTACGGAAAATCACGCGCATATCGAGCGGATCGCCGGGCGCATCATTCGCAAACTGCAAAA
CCCGATGCATTTTGAAAACGAGGTCTGTCAGATATCCGGCAGCATCGGGACGGTTGTTGCAGGTGACTACATCGAGCCAA
CAGCGGATCTGCTGTTTGCGGATGCGGATGCAGCGCTTTACGCGGCCAAACATGCTGGCCGTGGCTGTCATCTGTTCTTC
TCACCTGCGATGCGAGACATGCCGCAAACCGCGTGA

Upstream 100 bases:

>100_bases
AACACAAAGGTGTTCAGCACGGCTGTGAGGTGGTGGAAATCACCCTGCTTGAGACGGAGTTTGCTGCCGGTCGCGATTTT
GATTTGGGGGCGAAACGCGC

Downstream 100 bases:

>100_bases
CGCGATCAGCGCCGCGTTTTACCCAACACCGTCGTTTCAGCACCACGCAGGACGAACCCGTCGTGCATGGTAGAACGACC
GACGCTGTGCTGTCCCTCTC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSGDLCQEMLNVLCPMHIVFNDKGEMTSCGPTALKIFPGGLIGRGFLDVFHIKRPRKISTLDALMGQTGVRLNLQFRDMP
DSQLQGVVMPGPVAGDMVVNLSFGISIVDAVSDYNLTAADFAATDLTVEMLYLVEAKSAAMEASRRLNERLQVARVEAEE
LALTDTLTGLKNRRALDQELSALLHQGTPFALMHIDLDFFKAVNDTLGHAAGDYVLQRVAAIMNHETRKVDVVARVGGDE
FVILIKGTENHAHIERIAGRIIRKLQNPMHFENEVCQISGSIGTVVAGDYIEPTADLLFADADAALYAAKHAGRGCHLFF
SPAMRDMPQTA

Sequences:

>Translated_331_residues
MSGDLCQEMLNVLCPMHIVFNDKGEMTSCGPTALKIFPGGLIGRGFLDVFHIKRPRKISTLDALMGQTGVRLNLQFRDMP
DSQLQGVVMPGPVAGDMVVNLSFGISIVDAVSDYNLTAADFAATDLTVEMLYLVEAKSAAMEASRRLNERLQVARVEAEE
LALTDTLTGLKNRRALDQELSALLHQGTPFALMHIDLDFFKAVNDTLGHAAGDYVLQRVAAIMNHETRKVDVVARVGGDE
FVILIKGTENHAHIERIAGRIIRKLQNPMHFENEVCQISGSIGTVVAGDYIEPTADLLFADADAALYAAKHAGRGCHLFF
SPAMRDMPQTA
>Mature_330_residues
SGDLCQEMLNVLCPMHIVFNDKGEMTSCGPTALKIFPGGLIGRGFLDVFHIKRPRKISTLDALMGQTGVRLNLQFRDMPD
SQLQGVVMPGPVAGDMVVNLSFGISIVDAVSDYNLTAADFAATDLTVEMLYLVEAKSAAMEASRRLNERLQVARVEAEEL
ALTDTLTGLKNRRALDQELSALLHQGTPFALMHIDLDFFKAVNDTLGHAAGDYVLQRVAAIMNHETRKVDVVARVGGDEF
VILIKGTENHAHIERIAGRIIRKLQNPMHFENEVCQISGSIGTVVAGDYIEPTADLLFADADAALYAAKHAGRGCHLFFS
PAMRDMPQTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1788381, Length=166, Percent_Identity=40.9638554216867, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87082007, Length=178, Percent_Identity=35.9550561797753, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787541, Length=182, Percent_Identity=33.5164835164835, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787262, Length=264, Percent_Identity=30.6818181818182, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI145693134, Length=159, Percent_Identity=38.3647798742138, Blast_Score=86, Evalue=5e-18,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=36.6459627329193, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI87081977, Length=182, Percent_Identity=31.8681318681319, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081974, Length=110, Percent_Identity=37.2727272727273, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=35.8974358974359, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1788956, Length=166, Percent_Identity=30.7228915662651, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788085, Length=163, Percent_Identity=33.7423312883436, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1786584, Length=231, Percent_Identity=28.1385281385281, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI87081881, Length=179, Percent_Identity=32.9608938547486, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787802, Length=156, Percent_Identity=32.0512820512821, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 36093; Mature: 35962

Theoretical pI: Translated: 5.55; Mature: 5.55

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGDLCQEMLNVLCPMHIVFNDKGEMTSCGPTALKIFPGGLIGRGFLDVFHIKRPRKIST
CCHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCHHH
LDALMGQTGVRLNLQFRDMPDSQLQGVVMPGPVAGDMVVNLSFGISIVDAVSDYNLTAAD
HHHHHCCCCCEEEEEECCCCHHHCCCEEECCCCCCCEEEEEECCEEEEEHHCCCCCCHHH
FAATDLTVEMLYLVEAKSAAMEASRRLNERLQVARVEAEELALTDTLTGLKNRRALDQEL
HHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SALLHQGTPFALMHIDLDFFKAVNDTLGHAAGDYVLQRVAAIMNHETRKVDVVARVGGDE
HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCE
FVILIKGTENHAHIERIAGRIIRKLQNPMHFENEVCQISGSIGTVVAGDYIEPTADLLFA
EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCEEEECCCCCCCHHEEEE
DADAALYAAKHAGRGCHLFFSPAMRDMPQTA
CCCHHHHHHHHCCCCEEEEECCHHHCCCCCC
>Mature Secondary Structure 
SGDLCQEMLNVLCPMHIVFNDKGEMTSCGPTALKIFPGGLIGRGFLDVFHIKRPRKIST
CHHHHHHHHHHHCCEEEEECCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCHHH
LDALMGQTGVRLNLQFRDMPDSQLQGVVMPGPVAGDMVVNLSFGISIVDAVSDYNLTAAD
HHHHHCCCCCEEEEEECCCCHHHCCCEEECCCCCCCEEEEEECCEEEEEHHCCCCCCHHH
FAATDLTVEMLYLVEAKSAAMEASRRLNERLQVARVEAEELALTDTLTGLKNRRALDQEL
HHHHHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
SALLHQGTPFALMHIDLDFFKAVNDTLGHAAGDYVLQRVAAIMNHETRKVDVVARVGGDE
HHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCE
FVILIKGTENHAHIERIAGRIIRKLQNPMHFENEVCQISGSIGTVVAGDYIEPTADLLFA
EEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHEEECCCCCEEEECCCCCCCHHEEEE
DADAALYAAKHAGRGCHLFFSPAMRDMPQTA
CCCHHHHHHHHCCCCEEEEECCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]