Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is 110679763

Identifier: 110679763

GI number: 110679763

Start: 2413111

End: 2413527

Strand: Reverse

Name: 110679763

Synonym: RD1_2526

Alternate gene names: NA

Gene position: 2413527-2413111 (Counterclockwise)

Preceding gene: 110679764

Following gene: 110679762

Centisome position: 58.4

GC content: 58.27

Gene sequence:

>417_bases
ATGAACAGAGTGACAAAACAACACGCCAGCTTCGAACACAGCGACACCGCCCCGGAACGGGACCGCGACACCAAGCGTTC
CATGCTGCGCGGGTGGCGGCGTAAGTGTCCTCACTGCGGCAGCGGCCCGCTGATGAAGTCCTACCTCAAGGTAAATGATG
TGTGTTCGGTCTGCCGTGAAGAACTGTACCACCACCGCGCCGATGATGGCCCGGCCTATCTGACGATCCTCTTTGTGGGC
CATCTGATGGCACCGCTTTTGCACGTTGTCTTTGTGACATGGCGGCCCGAACCCCTGACGCTGTTTACGATATTCGCTGT
TGGATGTGTGGCGCTGTCGCTGTATTTGTTACCCCGGCTGAAAGGTGCCATAGTCGGATACCAATGGGCCCGTGGCATGG
GTGGCTTTGGCACCTAG

Upstream 100 bases:

>100_bases
GACATCCCGCCGCAGTGACCGTACACCATCTTTCAATCGACACATTGAAGGCGCAAAAGGCAGGACTTGTACAAACTCAC
AGGCCACGTCGGTGAACGAG

Downstream 100 bases:

>100_bases
GCCGGATCGAAACGGCATAAACCATGATCACAGGGGCACGCTCAGTGACCGAACACCCGCCCATAGACAAAACAGCCGTG
CGCAACGCCTCGACGGTTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MNRVTKQHASFEHSDTAPERDRDTKRSMLRGWRRKCPHCGSGPLMKSYLKVNDVCSVCREELYHHRADDGPAYLTILFVG
HLMAPLLHVVFVTWRPEPLTLFTIFAVGCVALSLYLLPRLKGAIVGYQWARGMGGFGT

Sequences:

>Translated_138_residues
MNRVTKQHASFEHSDTAPERDRDTKRSMLRGWRRKCPHCGSGPLMKSYLKVNDVCSVCREELYHHRADDGPAYLTILFVG
HLMAPLLHVVFVTWRPEPLTLFTIFAVGCVALSLYLLPRLKGAIVGYQWARGMGGFGT
>Mature_138_residues
MNRVTKQHASFEHSDTAPERDRDTKRSMLRGWRRKCPHCGSGPLMKSYLKVNDVCSVCREELYHHRADDGPAYLTILFVG
HLMAPLLHVVFVTWRPEPLTLFTIFAVGCVALSLYLLPRLKGAIVGYQWARGMGGFGT

Specific function: Unknown

COG id: COG5349

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15631; Mature: 15631

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
7.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRVTKQHASFEHSDTAPERDRDTKRSMLRGWRRKCPHCGSGPLMKSYLKVNDVCSVCRE
CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
ELYHHRADDGPAYLTILFVGHLMAPLLHVVFVTWRPEPLTLFTIFAVGCVALSLYLLPRL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
KGAIVGYQWARGMGGFGT
HHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNRVTKQHASFEHSDTAPERDRDTKRSMLRGWRRKCPHCGSGPLMKSYLKVNDVCSVCRE
CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH
ELYHHRADDGPAYLTILFVGHLMAPLLHVVFVTWRPEPLTLFTIFAVGCVALSLYLLPRL
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
KGAIVGYQWARGMGGFGT
HHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA