| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110679738
Identifier: 110679738
GI number: 110679738
Start: 2385032
End: 2385463
Strand: Direct
Name: 110679738
Synonym: RD1_2499
Alternate gene names: NA
Gene position: 2385032-2385463 (Clockwise)
Preceding gene: 110679737
Following gene: 110679740
Centisome position: 57.71
GC content: 54.4
Gene sequence:
>432_bases ATGACCGAACCTGCCCAGTCAAAAATACGTGGCAGCTGCCTTTGCGCAGCGGTCTCCTACGAAGTCAGAGGCTCATTCGA AAAGCTCTTTTTATGCAGCTGCGATCAATGCCGCCAAATTACAGGATCAGCTTTTGCATCCAACCTTTTCGTTGGTACTG ACGGGTTTGAGTGGCTCAGTGGCACCGAGCAGATCGTCCGCTATCAGGTCCCGGGGCGGGACATTTCCAAGTCGTTCTGC CGGGTCTGCGGGTCAGGAGTTCCCTGGACCAATGGTGACGGGACAAAGATGATCGTGCCCGCTGGTTCTCTGAGCGAACC AGCCCAAGTCGTTGAACGGCTCAGAATTTTCGTGTCGGAACAGCCAGAGTGGGCATTTGATCTGGAGCACGTTCCAACGC ATGCGAAATTCCCGAAAACTGCCGGTTCATAG
Upstream 100 bases:
>100_bases ATCTGTTTCTGCGACGCGGCAGGATGTGGGTTGATCGCATCTATCCGCGAAAACGCCGAATTCACCCCCAACAGCCGACC CATCAGGAAAGGTGGAACCG
Downstream 100 bases:
>100_bases CGTCTGGATGCGACACTGCTTCATCAGGCGATAGGGCGACATTGGGTGGAGACACACACGACAGCCCATCTGGTGCGCAG CCGTGCGTTTTATGTGTCAC
Product: hypothetical protein
Products: NA
Alternate protein names: Glutathione-Dependent Formaldehyde-Activating Gfa; Glutathione-Dependent Formaldehyde-Activating
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MTEPAQSKIRGSCLCAAVSYEVRGSFEKLFLCSCDQCRQITGSAFASNLFVGTDGFEWLSGTEQIVRYQVPGRDISKSFC RVCGSGVPWTNGDGTKMIVPAGSLSEPAQVVERLRIFVSEQPEWAFDLEHVPTHAKFPKTAGS
Sequences:
>Translated_143_residues MTEPAQSKIRGSCLCAAVSYEVRGSFEKLFLCSCDQCRQITGSAFASNLFVGTDGFEWLSGTEQIVRYQVPGRDISKSFC RVCGSGVPWTNGDGTKMIVPAGSLSEPAQVVERLRIFVSEQPEWAFDLEHVPTHAKFPKTAGS >Mature_142_residues TEPAQSKIRGSCLCAAVSYEVRGSFEKLFLCSCDQCRQITGSAFASNLFVGTDGFEWLSGTEQIVRYQVPGRDISKSFCR VCGSGVPWTNGDGTKMIVPAGSLSEPAQVVERLRIFVSEQPEWAFDLEHVPTHAKFPKTAGS
Specific function: Unknown
COG id: COG3791
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15615; Mature: 15484
Theoretical pI: Translated: 6.48; Mature: 6.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 6.3 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEPAQSKIRGSCLCAAVSYEVRGSFEKLFLCSCDQCRQITGSAFASNLFVGTDGFEWLS CCCCCCHHHCCHHHHHEEHHHHCCCCHHHEEECCHHHHHHHHHHHHCCEEECCCCCHHHC GTEQIVRYQVPGRDISKSFCRVCGSGVPWTNGDGTKMIVPAGSLSEPAQVVERLRIFVSE CCHHHEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC QPEWAFDLEHVPTHAKFPKTAGS CCCCEEECCCCCCCCCCCCCCCC >Mature Secondary Structure TEPAQSKIRGSCLCAAVSYEVRGSFEKLFLCSCDQCRQITGSAFASNLFVGTDGFEWLS CCCCCHHHCCHHHHHEEHHHHCCCCHHHEEECCHHHHHHHHHHHHCCEEECCCCCHHHC GTEQIVRYQVPGRDISKSFCRVCGSGVPWTNGDGTKMIVPAGSLSEPAQVVERLRIFVSE CCHHHEEEECCCCCHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCC QPEWAFDLEHVPTHAKFPKTAGS CCCCEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA