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The map label for this gene is rbsC [H]

Identifier: 110679630

GI number: 110679630

Start: 2270620

End: 2271630

Strand: Reverse

Name: rbsC [H]

Synonym: RD1_2381

Alternate gene names: 110679630

Gene position: 2271630-2270620 (Counterclockwise)

Preceding gene: 110679631

Following gene: 110679629

Centisome position: 54.96

GC content: 61.23

Gene sequence:

>1011_bases
ATGAACGACCGCATCCTCGACTTTGCCATTCGGTATGGCTTTTTGATCCTTCTTGTCGGGCTGATCGTCTATTTCAGCCT
CGCCGCACCGGGGTTTTTTGGCCCCTTGTCGGCGGCCTTTGTGCTGCAATCGGTTGCCATCACGGGCATCCTTGCGCTTG
GCGTGACCTGCACGCTGGTTGTGGGCGGATTTGATCTGTCGATCGGTGCTGTGGCTACATCAGCGCTGATGCTGTCGGCC
TATTCCATGGTGATCCTCGAACACCCTGCGATCGTTGCGGTGGCGCTCTGTCTCGTCATGGGCGCGCTCGTGGGTCTGAT
AAATGGGCTGCTGATCGTGAAGTTCCGCGTACCCGACCTGCTGGCGACGCTGGGCATGATGTTTCTGCTCATCGGCCTGC
AACGCATCCCGACGCAGGGCAATTCAATCTCAACCGGCATGACGCTGTCAGGCGGCACCGTGGCGGAGGGCACGTTTTCC
GCCGCCTTCCTCTGGCTGGGCCGTCACCGCTTTGATGTGATCATCGAGCGCCTGTTGCCGATGCCCGTGGTGATTTTCGT
GGTGATCGCGGTGCTGATCTGGCTGTTCCTCGGCTTTACCCGTCATGGGCGGCTGATGTATGCCATCGGGTCGAACGCGC
GCGCCGCCAGTCTGGTGGGCACGCCCGTCAACCGCTACAAGGTCATCGCCTACATGATTTCCGGCGTCACGGCCTCTGTC
GGCGGGATCCTGTTGGCCGCACGGCTGGGTCGCGGGGATATTGCCAGTGGAAACAACCTGTTGCTGGACAGTGTTGCAGC
AGCGCTGATCGGGTTTGCCGTGCTGGGGGCCGCGCGCCCGAATGCTTTTGGCACCGCCATGGGCGCGCTTTTTGTCGGCA
TCCTGCTGCAGGGCATGACGATGATGAACGCGCCCTATTACACGCAGGATTTCGTCAAGGGGGCCGTTCTGGTGGTGGCC
CTTGTGTTCACCTTTTACCTATCCTCGCGCCGCACCGGCACGGGGCACTGA

Upstream 100 bases:

>100_bases
AGGGCACCCTTGTCGGCGAACATGTGAACAAGGATGTCGACCTTGCCGCGCTCATCGCAGACGTCACCGGAAGAACATCA
AAGGCAACAGGCATATCCGC

Downstream 100 bases:

>100_bases
TCATCAGCAATAGGGAGGACTATATATGCTGAAACGTCACTTCATGGCCCTTGCGAGCGCGGCAGGCCTTGCGCTTGGCG
CTGGCGTCGCCGGGGCACAG

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MNDRILDFAIRYGFLILLVGLIVYFSLAAPGFFGPLSAAFVLQSVAITGILALGVTCTLVVGGFDLSIGAVATSALMLSA
YSMVILEHPAIVAVALCLVMGALVGLINGLLIVKFRVPDLLATLGMMFLLIGLQRIPTQGNSISTGMTLSGGTVAEGTFS
AAFLWLGRHRFDVIIERLLPMPVVIFVVIAVLIWLFLGFTRHGRLMYAIGSNARAASLVGTPVNRYKVIAYMISGVTASV
GGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAMGALFVGILLQGMTMMNAPYYTQDFVKGAVLVVA
LVFTFYLSSRRTGTGH

Sequences:

>Translated_336_residues
MNDRILDFAIRYGFLILLVGLIVYFSLAAPGFFGPLSAAFVLQSVAITGILALGVTCTLVVGGFDLSIGAVATSALMLSA
YSMVILEHPAIVAVALCLVMGALVGLINGLLIVKFRVPDLLATLGMMFLLIGLQRIPTQGNSISTGMTLSGGTVAEGTFS
AAFLWLGRHRFDVIIERLLPMPVVIFVVIAVLIWLFLGFTRHGRLMYAIGSNARAASLVGTPVNRYKVIAYMISGVTASV
GGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAMGALFVGILLQGMTMMNAPYYTQDFVKGAVLVVA
LVFTFYLSSRRTGTGH
>Mature_336_residues
MNDRILDFAIRYGFLILLVGLIVYFSLAAPGFFGPLSAAFVLQSVAITGILALGVTCTLVVGGFDLSIGAVATSALMLSA
YSMVILEHPAIVAVALCLVMGALVGLINGLLIVKFRVPDLLATLGMMFLLIGLQRIPTQGNSISTGMTLSGGTVAEGTFS
AAFLWLGRHRFDVIIERLLPMPVVIFVVIAVLIWLFLGFTRHGRLMYAIGSNARAASLVGTPVNRYKVIAYMISGVTASV
GGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAMGALFVGILLQGMTMMNAPYYTQDFVKGAVLVVA
LVFTFYLSSRRTGTGH

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=310, Percent_Identity=34.8387096774194, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=31.3664596273292, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI145693152, Length=331, Percent_Identity=28.3987915407855, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1789992, Length=364, Percent_Identity=28.5714285714286, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787794, Length=320, Percent_Identity=31.5625, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1790524, Length=326, Percent_Identity=24.5398773006135, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1788471, Length=295, Percent_Identity=28.4745762711864, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87082395, Length=277, Percent_Identity=30.3249097472924, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787793, Length=289, Percent_Identity=27.681660899654, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI145693214, Length=274, Percent_Identity=30.6569343065693, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 35270; Mature: 35270

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDRILDFAIRYGFLILLVGLIVYFSLAAPGFFGPLSAAFVLQSVAITGILALGVTCTLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHE
VGGFDLSIGAVATSALMLSAYSMVILEHPAIVAVALCLVMGALVGLINGLLIVKFRVPDL
ECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHH
LATLGMMFLLIGLQRIPTQGNSISTGMTLSGGTVAEGTFSAAFLWLGRHRFDVIIERLLP
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
MPVVIFVVIAVLIWLFLGFTRHGRLMYAIGSNARAASLVGTPVNRYKVIAYMISGVTASV
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
GGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAMGALFVGILLQGMT
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
MMNAPYYTQDFVKGAVLVVALVFTFYLSSRRTGTGH
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNDRILDFAIRYGFLILLVGLIVYFSLAAPGFFGPLSAAFVLQSVAITGILALGVTCTLV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHE
VGGFDLSIGAVATSALMLSAYSMVILEHPAIVAVALCLVMGALVGLINGLLIVKFRVPDL
ECCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHH
LATLGMMFLLIGLQRIPTQGNSISTGMTLSGGTVAEGTFSAAFLWLGRHRFDVIIERLLP
HHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
MPVVIFVVIAVLIWLFLGFTRHGRLMYAIGSNARAASLVGTPVNRYKVIAYMISGVTASV
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH
GGILLAARLGRGDIASGNNLLLDSVAAALIGFAVLGAARPNAFGTAMGALFVGILLQGMT
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
MMNAPYYTQDFVKGAVLVVALVFTFYLSSRRTGTGH
HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]