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The map label for this gene is ytfM [H]

Identifier: 110679584

GI number: 110679584

Start: 2222981

End: 2224795

Strand: Direct

Name: ytfM [H]

Synonym: RD1_2329

Alternate gene names: 110679584

Gene position: 2222981-2224795 (Clockwise)

Preceding gene: 110679583

Following gene: 110679585

Centisome position: 53.78

GC content: 60.88

Gene sequence:

>1815_bases
ATGGCGATGCACAATGCGTCTTGGGGCAGTCGGAACATCTCTGCGCTGGCATCGGCATTGTGCATCTGTTTCGCAAGCTC
TGCTCTGGCCTATGAGGCGACGCTGTCGGGCCCCCTGGACGAAGAGCTTGCGGCTGAATTGCAAGGCGGCTCGCTCCTGA
TCGAACAATCGCTGTTGGAAGAAACGCCGGATGTGCGTGAAATCGTGTCCTCAGCGCAGGCGGATTATCGTCGCCTGCTG
GCCGTGCTCTACAGCAGGGGATATTTTGGCCCCACGATCGAAATCAAACTCGATGGGCGCGAGGCCGCGTCGATTCTTGC
GGTTACGCCGCCCGAACGCGTGTCGGTGGCGACCATCACCGTTGATCCGGGGCGTCAGTTCCGCTTTGGCGCGGTCGAGG
TCAGCCCGCTGAACCAAAACACGACCTTGCCAGAAGAATTGGAAAAGGGCGAGGTCGCGCGCATCACCTTGTTGCAATCC
GCAGCCGCATCGGCGGTATCGGGGTGGCGCGATGCGGGGCATGCCAAGGCCGAAGTCACCGACCAGCAAATCACGGCGCG
CCATGGCAGCGCACAGATCGACGCAAAAGTGCGGATTGATCCCGGTCCAAAGCTCAGCTTTGGCGCGTTGCGCGTGCGGG
GCGAGTCGGCGGTCAGTCGAGAGCGGATCATCGAGATTGCAGGGCTGCCCGAGGGGGAACAGTTTTCCCCCGAGGAAGTC
AGGGATGCGGCTGGCCGCCTGCGCCGTTCGGGCGCGTTCCGATCTGTGGCCATGATCGAAGGCGAGGTGTCAGACAGTGG
CGATACGCTGCCCATCAATGTGCGCGTCGCGGATAACAAGCCGCGTCGCCTGGGTTTTGGCGGTGAATTCGCAACGATCG
AAGGCGTGACCCTCAGCGGTTTCTGGCTGCACCGCAACATCTTTGGCGGGGCTGAAAGCCTGCGCTTTGATGCCGAAATC
GGCGGTATCGGTGGAGATACCGGGGGGATCGATTATTTGCTCGGAACCCGCTTTGAGCGCCCGGCGACATTCAGCAAGGA
CATCAACTTTTTTGCCTTCGGCGAGATTGAGCAGGAAGATGAGCCAAACTACTTTTCGCGCAGCGTCTCGGTCGGGGCGG
GCATCACGTATTTCGCAACGGATGAGCGCACATACCGCTTTGGCCTCGGATTCAGCCGCGCCACCACCGAAGACGCCTTC
GGTGACAGCGATTACACGCTTTTCCTCCTGCCGGTGGGCGCGACCTATGATTATCGCAACAACGAGTTGGACGCGCGGCG
CGGCTATTACGCAGAGGCGAAGCTGACGCCGTTTGTTGCCTTGTCCGGGACCGACAATGGTTTGCTCTCTGAACTGGATG
TGCGCACCTATCTGACCGCTGGCGAAACGAGCCCCACAACGCTGGCGCTGCGCGCGCAACTGGGGTCCTTGGCCGGACCG
TCGCTGCGTGACGCACCGGCGGATTTCCTGTTCTATTCCGGTGGTGGGGGCACTGTGCGGGGACAGGATTTCGAATCCCT
CGGCGTGGATGTGGGCGGCGGTGACATTATCGGTGGCCGCTCCTTTCTGGGCCTGTCCGCGGAGCTGCGTCTGCGCACGA
CCGGCAGTCTTGGGTATATTGGCTTTGTCGATGCAGGCTACATCGGTGAGGAAGCATTTCCAGATGGCTCCGGTGAGTGG
CACAGCGGCGCAGGCGTTGGCATCAGGTATGAGACACCGATCGGGCCGCTGCGTTTTGATGTTGGTGTACCGACAAGCGG
TGATACAGATGGGGAAAGCTTCCAACTCTATTTCGGGATAGGCCAGTCGTTTTGA

Upstream 100 bases:

>100_bases
GCAGCGCGTCACAGTTTGCCGCTATAAGGCTAGCATCCGGGCGCATCCTGACCCCAACATATAGACGTCAGATGCGTATC
CAAGAGGGGGCAGAGGTAAT

Downstream 100 bases:

>100_bases
GATACCTGCTGATCATTGCTGTCACCCTGACATGTTTGCCGCTCTCGCTCGTGGCGCAAGAGGATGAGGATGACGGTGGC
TTTCTGACCCGCACGATCGA

Product: outer membrane protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 604; Mature: 603

Protein sequence:

>604_residues
MAMHNASWGSRNISALASALCICFASSALAYEATLSGPLDEELAAELQGGSLLIEQSLLEETPDVREIVSSAQADYRRLL
AVLYSRGYFGPTIEIKLDGREAASILAVTPPERVSVATITVDPGRQFRFGAVEVSPLNQNTTLPEELEKGEVARITLLQS
AAASAVSGWRDAGHAKAEVTDQQITARHGSAQIDAKVRIDPGPKLSFGALRVRGESAVSRERIIEIAGLPEGEQFSPEEV
RDAAGRLRRSGAFRSVAMIEGEVSDSGDTLPINVRVADNKPRRLGFGGEFATIEGVTLSGFWLHRNIFGGAESLRFDAEI
GGIGGDTGGIDYLLGTRFERPATFSKDINFFAFGEIEQEDEPNYFSRSVSVGAGITYFATDERTYRFGLGFSRATTEDAF
GDSDYTLFLLPVGATYDYRNNELDARRGYYAEAKLTPFVALSGTDNGLLSELDVRTYLTAGETSPTTLALRAQLGSLAGP
SLRDAPADFLFYSGGGGTVRGQDFESLGVDVGGGDIIGGRSFLGLSAELRLRTTGSLGYIGFVDAGYIGEEAFPDGSGEW
HSGAGVGIRYETPIGPLRFDVGVPTSGDTDGESFQLYFGIGQSF

Sequences:

>Translated_604_residues
MAMHNASWGSRNISALASALCICFASSALAYEATLSGPLDEELAAELQGGSLLIEQSLLEETPDVREIVSSAQADYRRLL
AVLYSRGYFGPTIEIKLDGREAASILAVTPPERVSVATITVDPGRQFRFGAVEVSPLNQNTTLPEELEKGEVARITLLQS
AAASAVSGWRDAGHAKAEVTDQQITARHGSAQIDAKVRIDPGPKLSFGALRVRGESAVSRERIIEIAGLPEGEQFSPEEV
RDAAGRLRRSGAFRSVAMIEGEVSDSGDTLPINVRVADNKPRRLGFGGEFATIEGVTLSGFWLHRNIFGGAESLRFDAEI
GGIGGDTGGIDYLLGTRFERPATFSKDINFFAFGEIEQEDEPNYFSRSVSVGAGITYFATDERTYRFGLGFSRATTEDAF
GDSDYTLFLLPVGATYDYRNNELDARRGYYAEAKLTPFVALSGTDNGLLSELDVRTYLTAGETSPTTLALRAQLGSLAGP
SLRDAPADFLFYSGGGGTVRGQDFESLGVDVGGGDIIGGRSFLGLSAELRLRTTGSLGYIGFVDAGYIGEEAFPDGSGEW
HSGAGVGIRYETPIGPLRFDVGVPTSGDTDGESFQLYFGIGQSF
>Mature_603_residues
AMHNASWGSRNISALASALCICFASSALAYEATLSGPLDEELAAELQGGSLLIEQSLLEETPDVREIVSSAQADYRRLLA
VLYSRGYFGPTIEIKLDGREAASILAVTPPERVSVATITVDPGRQFRFGAVEVSPLNQNTTLPEELEKGEVARITLLQSA
AASAVSGWRDAGHAKAEVTDQQITARHGSAQIDAKVRIDPGPKLSFGALRVRGESAVSRERIIEIAGLPEGEQFSPEEVR
DAAGRLRRSGAFRSVAMIEGEVSDSGDTLPINVRVADNKPRRLGFGGEFATIEGVTLSGFWLHRNIFGGAESLRFDAEIG
GIGGDTGGIDYLLGTRFERPATFSKDINFFAFGEIEQEDEPNYFSRSVSVGAGITYFATDERTYRFGLGFSRATTEDAFG
DSDYTLFLLPVGATYDYRNNELDARRGYYAEAKLTPFVALSGTDNGLLSELDVRTYLTAGETSPTTLALRAQLGSLAGPS
LRDAPADFLFYSGGGGTVRGQDFESLGVDVGGGDIIGGRSFLGLSAELRLRTTGSLGYIGFVDAGYIGEEAFPDGSGEWH
SGAGVGIRYETPIGPLRFDVGVPTSGDTDGESFQLYFGIGQSF

Specific function: Unknown

COG id: COG0729

COG function: function code M; Outer membrane protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0698 [H]

Homologues:

Organism=Escherichia coli, GI1790666, Length=132, Percent_Identity=32.5757575757576, Blast_Score=76, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 64504; Mature: 64373

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMHNASWGSRNISALASALCICFASSALAYEATLSGPLDEELAAELQGGSLLIEQSLLE
CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCEEEEEHHHHH
ETPDVREIVSSAQADYRRLLAVLYSRGYFGPTIEIKLDGREAASILAVTPPERVSVATIT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEE
VDPGRQFRFGAVEVSPLNQNTTLPEELEKGEVARITLLQSAAASAVSGWRDAGHAKAEVT
ECCCCCEEEEEEEEECCCCCCCCHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEC
DQQITARHGSAQIDAKVRIDPGPKLSFGALRVRGESAVSRERIIEIAGLPEGEQFSPEEV
CHHHEECCCCEEEEEEEEECCCCCCEEEEEEEECCHHHCHHHEEEEECCCCCCCCCHHHH
RDAAGRLRRSGAFRSVAMIEGEVSDSGDTLPINVRVADNKPRRLGFGGEFATIEGVTLSG
HHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCEECCCCCEEEEECEEEEE
FWLHRNIFGGAESLRFDAEIGGIGGDTGGIDYLLGTRFERPATFSKDINFFAFGEIEQED
EEEEEECCCCCCCEEEEEEECCCCCCCCCEEHHHCCCCCCCCCCCCCCCEEEECCCCCCC
EPNYFSRSVSVGAGITYFATDERTYRFGLGFSRATTEDAFGDSDYTLFLLPVGATYDYRN
CCCHHHCEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEECCCC
NELDARRGYYAEAKLTPFVALSGTDNGLLSELDVRTYLTAGETSPTTLALRAQLGSLAGP
CCCCCCCCEEEECCCCEEEEEECCCCCCHHHCCEEEEEECCCCCCCEEEEEEHHCCCCCC
SLRDAPADFLFYSGGGGTVRGQDFESLGVDVGGGDIIGGRSFLGLSAELRLRTTGSLGYI
CCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCEECCCEEEECCEEEEEEECCCCCEE
GFVDAGYIGEEAFPDGSGEWHSGAGVGIRYETPIGPLRFDVGVPTSGDTDGESFQLYFGI
EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEC
GQSF
CCCC
>Mature Secondary Structure 
AMHNASWGSRNISALASALCICFASSALAYEATLSGPLDEELAAELQGGSLLIEQSLLE
CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCEEEEEHHHHH
ETPDVREIVSSAQADYRRLLAVLYSRGYFGPTIEIKLDGREAASILAVTPPERVSVATIT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEEEE
VDPGRQFRFGAVEVSPLNQNTTLPEELEKGEVARITLLQSAAASAVSGWRDAGHAKAEVT
ECCCCCEEEEEEEEECCCCCCCCHHHHCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEEC
DQQITARHGSAQIDAKVRIDPGPKLSFGALRVRGESAVSRERIIEIAGLPEGEQFSPEEV
CHHHEECCCCEEEEEEEEECCCCCCEEEEEEEECCHHHCHHHEEEEECCCCCCCCCHHHH
RDAAGRLRRSGAFRSVAMIEGEVSDSGDTLPINVRVADNKPRRLGFGGEFATIEGVTLSG
HHHHHHHHHCCCCEEEEEEECCCCCCCCEEEEEEEECCCCCCEECCCCCEEEEECEEEEE
FWLHRNIFGGAESLRFDAEIGGIGGDTGGIDYLLGTRFERPATFSKDINFFAFGEIEQED
EEEEEECCCCCCCEEEEEEECCCCCCCCCEEHHHCCCCCCCCCCCCCCCEEEECCCCCCC
EPNYFSRSVSVGAGITYFATDERTYRFGLGFSRATTEDAFGDSDYTLFLLPVGATYDYRN
CCCHHHCEEECCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCEECCCC
NELDARRGYYAEAKLTPFVALSGTDNGLLSELDVRTYLTAGETSPTTLALRAQLGSLAGP
CCCCCCCCEEEECCCCEEEEEECCCCCCHHHCCEEEEEECCCCCCCEEEEEEHHCCCCCC
SLRDAPADFLFYSGGGGTVRGQDFESLGVDVGGGDIIGGRSFLGLSAELRLRTTGSLGYI
CCCCCCCCEEEECCCCCCCCCCCHHHCCCCCCCCCEECCCEEEECCEEEEEEECCCCCEE
GFVDAGYIGEEAFPDGSGEWHSGAGVGIRYETPIGPLRFDVGVPTSGDTDGESFQLYFGI
EEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCEEEEEEEC
GQSF
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]