| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is mco [H]
Identifier: 110679565
GI number: 110679565
Start: 2201862
End: 2203250
Strand: Direct
Name: mco [H]
Synonym: RD1_2306
Alternate gene names: 110679565
Gene position: 2201862-2203250 (Clockwise)
Preceding gene: 110679564
Following gene: 110679566
Centisome position: 53.27
GC content: 65.08
Gene sequence:
>1389_bases ATGACAGGGTTCACCCGCAGGCAGTTTCATCAATCGGTTCTCAGTGCCGCAGCGGCAGCAGCACTGCCGAGCGTCGCAGG GGCTCAGACGGCGCCCGTGCTTCATGCGCGGACGGGCAGCGCGCGGCTTGCGCCGGCACAATACCCGGAAACGCGGATTT GGGGGTATGACGGCACCGTGCCGGGGCCGATCCTGCGCGCCCAACAGGGACAGCGCATCGGCAGGGTCTTTCAAAATGAC CTGCCGCAGGCGTCATCCGTGCACTGGCACGGCATTCGGATCGAAAACGCCATGGATGGGGTGCCGGGCATGACGCAAGC GGCGGTGGAACCGGGCGCGGCGTTTCTGTATGATTTCGTGCTGCCGGACGCGGGCACCTATTGGTATCACCCGCATAACC GCACCTATGAGCAGATGGCGCGTGGCCTTTATGGCGCGCTGATCGTGGATGAGGCGACAGGCGCGCCCGAGGTCGATCTG GACGAGGTGTTGCTGCTGGATGATTGGCGTCTGAATGATGACGCCCAGATCGCCGAAGGGTTTGGCAACATGCGTGACTG GTCCCATGCGGGCCGGATCGGCAACTGGATCACGGTGAACGGCGATGGCGGCTGGTCGCGCGCGGTGCCGCGTCTTGCCC GGATGCGGCTGCGCCTTGTGAACACGGCCAATGCGCGGATTTTCACGCTGGCGGCGCGCGGTCTTGAGGGCTGGGTGGTC GCTCTGGACGGGATGCCGCTTGCGGCTCCGCAGCCGCTGGCTGAACTGACACTTGCCCCGGCACAGCGCGCTGACCTGAT CGTCGATGTGGTGGCTGGTGAGGGGGAAGAAGCCTTTCTCGTCAGCTATGAGCGCGACGGCGGCTATGCCGTTGCGGCTT TCCCGGTCACCCGTTCGGCGCGGGAAATGCGCATGACCGCACCTGTTGCCTTACCCCCAAACCCGGTGCCTGCACTCGGC CCGCTGGAGAGCGCGCGGCGCGCTGATCTGCTGATGGAGGGCGGGGCCATGGGCGCCATGGCGGGCGCGATGATGGGCGG TCAAAGGATGGAAATGCGCGAGATGGTCGCTGCCGGAAAGGTCTGGGCGTTCAACGGCATGGCCGATATGGCTGACACCC CCCTCATCGAGGCAAACCGTGGCGAGACCGTGCGGATCGCGATGACCAACGACACCCGCTGGCAGCATGGGATGCATCTG CATGGGCATCATTTCAGGCAGATTGGGCGCGATGGCGCTTTGGGTCCGCTGCGGGACACGCTGCTGATGAACCGGGGCGA GACGGCTGAGATCGCCTTTGTCGCGGATAATCCGGGCGATTGGCTGCTGCATTGCCATATGCTGGAGCATTCCGCGGGCG GGATGATGACCTGGTTGCGCGTCCTGTAA
Upstream 100 bases:
>100_bases TCATCACCGTGACACCCCTGCCGGGCAAAGGCCCCGGCGCATCGACACCACTTATGTTGCCACCCATCGGGGCGGCAGGG CACACATCAGGAGACGCGGC
Downstream 100 bases:
>100_bases CGCGCCATCTGACGAACACACGTAACAGGAGATACAAAATGAACCGCAGACGCTTTATCTTTAACAGCCTCGCCTCCGGC CTTGGGGCCGGGATGCTCGC
Product: multicopper oxidase, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MTGFTRRQFHQSVLSAAAAAALPSVAGAQTAPVLHARTGSARLAPAQYPETRIWGYDGTVPGPILRAQQGQRIGRVFQND LPQASSVHWHGIRIENAMDGVPGMTQAAVEPGAAFLYDFVLPDAGTYWYHPHNRTYEQMARGLYGALIVDEATGAPEVDL DEVLLLDDWRLNDDAQIAEGFGNMRDWSHAGRIGNWITVNGDGGWSRAVPRLARMRLRLVNTANARIFTLAARGLEGWVV ALDGMPLAAPQPLAELTLAPAQRADLIVDVVAGEGEEAFLVSYERDGGYAVAAFPVTRSAREMRMTAPVALPPNPVPALG PLESARRADLLMEGGAMGAMAGAMMGGQRMEMREMVAAGKVWAFNGMADMADTPLIEANRGETVRIAMTNDTRWQHGMHL HGHHFRQIGRDGALGPLRDTLLMNRGETAEIAFVADNPGDWLLHCHMLEHSAGGMMTWLRVL
Sequences:
>Translated_462_residues MTGFTRRQFHQSVLSAAAAAALPSVAGAQTAPVLHARTGSARLAPAQYPETRIWGYDGTVPGPILRAQQGQRIGRVFQND LPQASSVHWHGIRIENAMDGVPGMTQAAVEPGAAFLYDFVLPDAGTYWYHPHNRTYEQMARGLYGALIVDEATGAPEVDL DEVLLLDDWRLNDDAQIAEGFGNMRDWSHAGRIGNWITVNGDGGWSRAVPRLARMRLRLVNTANARIFTLAARGLEGWVV ALDGMPLAAPQPLAELTLAPAQRADLIVDVVAGEGEEAFLVSYERDGGYAVAAFPVTRSAREMRMTAPVALPPNPVPALG PLESARRADLLMEGGAMGAMAGAMMGGQRMEMREMVAAGKVWAFNGMADMADTPLIEANRGETVRIAMTNDTRWQHGMHL HGHHFRQIGRDGALGPLRDTLLMNRGETAEIAFVADNPGDWLLHCHMLEHSAGGMMTWLRVL >Mature_461_residues TGFTRRQFHQSVLSAAAAAALPSVAGAQTAPVLHARTGSARLAPAQYPETRIWGYDGTVPGPILRAQQGQRIGRVFQNDL PQASSVHWHGIRIENAMDGVPGMTQAAVEPGAAFLYDFVLPDAGTYWYHPHNRTYEQMARGLYGALIVDEATGAPEVDLD EVLLLDDWRLNDDAQIAEGFGNMRDWSHAGRIGNWITVNGDGGWSRAVPRLARMRLRLVNTANARIFTLAARGLEGWVVA LDGMPLAAPQPLAELTLAPAQRADLIVDVVAGEGEEAFLVSYERDGGYAVAAFPVTRSAREMRMTAPVALPPNPVPALGP LESARRADLLMEGGAMGAMAGAMMGGQRMEMREMVAAGKVWAFNGMADMADTPLIEANRGETVRIAMTNDTRWQHGMHLH GHHFRQIGRDGALGPLRDTLLMNRGETAEIAFVADNPGDWLLHCHMLEHSAGGMMTWLRVL
Specific function: May be involved in copper homeostasis and oxidative stress response [H]
COG id: COG2132
COG function: function code Q; Putative multicopper oxidases
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the multicopper oxidase family [H]
Homologues:
Organism=Escherichia coli, GI1786314, Length=524, Percent_Identity=28.0534351145038, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI1789394, Length=340, Percent_Identity=27.3529411764706, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323703, Length=446, Percent_Identity=24.6636771300448, Blast_Score=104, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6321067, Length=514, Percent_Identity=21.7898832684825, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI18859919, Length=245, Percent_Identity=27.7551020408163, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI28574104, Length=163, Percent_Identity=31.2883435582822, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: 40 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001117 - InterPro: IPR011706 - InterPro: IPR011707 - InterPro: IPR002355 - InterPro: IPR008972 [H]
Pfam domain/function: PF00394 Cu-oxidase; PF07731 Cu-oxidase_2; PF07732 Cu-oxidase_3 [H]
EC number: NA
Molecular weight: Translated: 50131; Mature: 50000
Theoretical pI: Translated: 6.12; Mature: 6.12
Prosite motif: PS00079 MULTICOPPER_OXIDASE1 ; PS00080 MULTICOPPER_OXIDASE2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 5.4 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 5.2 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGFTRRQFHQSVLSAAAAAALPSVAGAQTAPVLHARTGSARLAPAQYPETRIWGYDGTV CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCC PGPILRAQQGQRIGRVFQNDLPQASSVHWHGIRIENAMDGVPGMTQAAVEPGAAFLYDFV CCCHHHHHCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCHHEEEEEC LPDAGTYWYHPHNRTYEQMARGLYGALIVDEATGAPEVDLDEVLLLDDWRLNDDAQIAEG CCCCCCEEECCCCCCHHHHHCCHHEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHH FGNMRDWSHAGRIGNWITVNGDGGWSRAVPRLARMRLRLVNTANARIFTLAARGLEGWVV CCCCCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCEEEE ALDGMPLAAPQPLAELTLAPAQRADLIVDVVAGEGEEAFLVSYERDGGYAVAAFPVTRSA EECCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCH REMRMTAPVALPPNPVPALGPLESARRADLLMEGGAMGAMAGAMMGGQRMEMREMVAAGK HHHEEECCEECCCCCCCCCCCHHHHHHHHHEECCCCHHHHHHHHHCCCHHHHHHHHHCCC VWAFNGMADMADTPLIEANRGETVRIAMTNDTRWQHGMHLHGHHFRQIGRDGALGPLRDT EEEECCCHHHCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCHHHHH LLMNRGETAEIAFVADNPGDWLLHCHMLEHSAGGMMTWLRVL HHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHC >Mature Secondary Structure TGFTRRQFHQSVLSAAAAAALPSVAGAQTAPVLHARTGSARLAPAQYPETRIWGYDGTV CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEECCCCCC PGPILRAQQGQRIGRVFQNDLPQASSVHWHGIRIENAMDGVPGMTQAAVEPGAAFLYDFV CCCHHHHHCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCHHEEEEEC LPDAGTYWYHPHNRTYEQMARGLYGALIVDEATGAPEVDLDEVLLLDDWRLNDDAQIAEG CCCCCCEEECCCCCCHHHHHCCHHEEEEEECCCCCCCCCCCCEEEEECCCCCCCHHHHHH FGNMRDWSHAGRIGNWITVNGDGGWSRAVPRLARMRLRLVNTANARIFTLAARGLEGWVV CCCCCCHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHEECCCCEEEEEEECCCCEEEE ALDGMPLAAPQPLAELTLAPAQRADLIVDVVAGEGEEAFLVSYERDGGYAVAAFPVTRSA EECCCCCCCCCCHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCH REMRMTAPVALPPNPVPALGPLESARRADLLMEGGAMGAMAGAMMGGQRMEMREMVAAGK HHHEEECCEECCCCCCCCCCCHHHHHHHHHEECCCCHHHHHHHHHCCCHHHHHHHHHCCC VWAFNGMADMADTPLIEANRGETVRIAMTNDTRWQHGMHLHGHHFRQIGRDGALGPLRDT EEEECCCHHHCCCCEEECCCCCEEEEEEECCCCCCCCCCCCCHHHHHHCCCCCCCHHHHH LLMNRGETAEIAFVADNPGDWLLHCHMLEHSAGGMMTWLRVL HHHCCCCCEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12950922 [H]