Click here to switch to the map view.

The map label for this gene is srpC [H]

Identifier: 110679542

GI number: 110679542

Start: 2176075

End: 2177322

Strand: Reverse

Name: srpC [H]

Synonym: RD1_2278

Alternate gene names: 110679542

Gene position: 2177322-2176075 (Counterclockwise)

Preceding gene: 110679543

Following gene: 110679541

Centisome position: 52.68

GC content: 60.58

Gene sequence:

>1248_bases
ATGACCGCGCCAACACTCATCGAATTGTGCCGGGTCTTTGCCCGCATCGGTGTTTTGTCCTTTGGCGGACCGGCCGCGCA
GATCGCCCTGATGCATCAAACGCTGGTGGAAGAGAAAAAATGGCTGTCCGAAGACAGTTTTCTGCGCGCGCTGTCATTGT
GCATGTTGCTGCCCGGACCCGAAGCGATGCAACTGGCGACTTATGCCGGCTGGCGTCTGGACGGTGTGCGCGGCGGGCTG
GTCGCGGGGTTGTTGTTTGTCCTGCCCGGTGCGGCTGTGATCCTTGCCCTTGCCCTGATCTATGCCCATTTTGGACAGGT
GCCGTTGGTTCAGGCAGCCTTTACCGGGATCAAGGCCGCCGTGATCATCATCGTCCTGCAGGCGCTGCTGAAACTGTCGC
GCAAGACGCTCACCGGCAAAGGCGCATGGGCCCTCGCCGCTGGCGCGTTTATGTCCCTGTATTTCCTGAATATTCCCTAT
CCGCTCATCATCGCCACGGCCGCTGCCGTCGGTGCATTGACCATGGCGCCCGCCACACCGGCGGCTTCGGCGTCGCATGA
GACAGCCACAAACCCGGTTTTGACGCTCACCCTCTGGGGCACGCTATGGGGCTGCCCGATTGTTGTGCTCGCCCTGATGG
ACCACATGTTTTTGATGCAAATCGCGTTGTTCTTTTCGAAACTGGCCGTGGTGAGCTTTGGCGGGGCCTATGCCGTGCTG
GCCTATATGACGCAGACCGTGGTGGCAGAGCATGGCTGGATCACCACCGGGCAAATGATGGATGCTTTGGGCCTTGCGGA
AACGACGCCCGGACCGCTCATTCTGGTCACGCAATTCGTCGCCATGATCGCCGGGTTCAATGAAAGCGGCCCGCTTTTGG
CGCTGGCTGCGGGGGCGGTTGCGCTTTGGGTGACATTTACACCCTGTTTTTTATGGATTTTCCTCGCCGGTCCCTATCTG
GATGCGATCGCGACACGCCCGCGCCTCTCCGGCGCGCTCAGCGGTATTACCGCGGCAGTTGTGGGGGTGATCCTCAATCT
TGCGGTGTGGTTTTCAATCCATGTGCTGTTTGGGCAGGTGACCACCCTACCCGGTTTGCCCGCCCCGGCCCCTGTCCCGA
CGTCGCTTGACATCAATGCGCTCGCTCTGACGCTGCTGGCCGCTGTCGTTGTGCTGCTGCTTAAACGTGGTATCGCGGAA
ACACTGGGTATTCTGGCGGTCGCGGGCCTTGCGCTGACGCTTCTGTAA

Upstream 100 bases:

>100_bases
GGGCGATGTGCCACTTCTTGCACCAGGGACAAAGCGGTTAGCGATACAACCCGTCGCATGACATCTCGCACGCCCCCGGC
AGGCCGCGAAAGGTACGGAA

Downstream 100 bases:

>100_bases
AACGACGCCGGTTAAGACGCAGAGACCTCTTTTATCCCCAGAGGAATCGGCTATGCTCGCGTTAGACGAACTCTTTGCAC
CCAGGTATGAGATGACCCGC

Product: chromate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MTAPTLIELCRVFARIGVLSFGGPAAQIALMHQTLVEEKKWLSEDSFLRALSLCMLLPGPEAMQLATYAGWRLDGVRGGL
VAGLLFVLPGAAVILALALIYAHFGQVPLVQAAFTGIKAAVIIIVLQALLKLSRKTLTGKGAWALAAGAFMSLYFLNIPY
PLIIATAAAVGALTMAPATPAASASHETATNPVLTLTLWGTLWGCPIVVLALMDHMFLMQIALFFSKLAVVSFGGAYAVL
AYMTQTVVAEHGWITTGQMMDALGLAETTPGPLILVTQFVAMIAGFNESGPLLALAAGAVALWVTFTPCFLWIFLAGPYL
DAIATRPRLSGALSGITAAVVGVILNLAVWFSIHVLFGQVTTLPGLPAPAPVPTSLDINALALTLLAAVVVLLLKRGIAE
TLGILAVAGLALTLL

Sequences:

>Translated_415_residues
MTAPTLIELCRVFARIGVLSFGGPAAQIALMHQTLVEEKKWLSEDSFLRALSLCMLLPGPEAMQLATYAGWRLDGVRGGL
VAGLLFVLPGAAVILALALIYAHFGQVPLVQAAFTGIKAAVIIIVLQALLKLSRKTLTGKGAWALAAGAFMSLYFLNIPY
PLIIATAAAVGALTMAPATPAASASHETATNPVLTLTLWGTLWGCPIVVLALMDHMFLMQIALFFSKLAVVSFGGAYAVL
AYMTQTVVAEHGWITTGQMMDALGLAETTPGPLILVTQFVAMIAGFNESGPLLALAAGAVALWVTFTPCFLWIFLAGPYL
DAIATRPRLSGALSGITAAVVGVILNLAVWFSIHVLFGQVTTLPGLPAPAPVPTSLDINALALTLLAAVVVLLLKRGIAE
TLGILAVAGLALTLL
>Mature_414_residues
TAPTLIELCRVFARIGVLSFGGPAAQIALMHQTLVEEKKWLSEDSFLRALSLCMLLPGPEAMQLATYAGWRLDGVRGGLV
AGLLFVLPGAAVILALALIYAHFGQVPLVQAAFTGIKAAVIIIVLQALLKLSRKTLTGKGAWALAAGAFMSLYFLNIPYP
LIIATAAAVGALTMAPATPAASASHETATNPVLTLTLWGTLWGCPIVVLALMDHMFLMQIALFFSKLAVVSFGGAYAVLA
YMTQTVVAEHGWITTGQMMDALGLAETTPGPLILVTQFVAMIAGFNESGPLLALAAGAVALWVTFTPCFLWIFLAGPYLD
AIATRPRLSGALSGITAAVVGVILNLAVWFSIHVLFGQVTTLPGLPAPAPVPTSLDINALALTLLAAVVVLLLKRGIAET
LGILAVAGLALTLL

Specific function: May function in the active transport of chromate into the cell under sulfur-deficient conditions [H]

COG id: COG2059

COG function: function code P; Chromate transport protein ChrA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003370
- InterPro:   IPR014047 [H]

Pfam domain/function: PF02417 Chromate_transp [H]

EC number: NA

Molecular weight: Translated: 43259; Mature: 43128

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAPTLIELCRVFARIGVLSFGGPAAQIALMHQTLVEEKKWLSEDSFLRALSLCMLLPGP
CCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
EAMQLATYAGWRLDGVRGGLVAGLLFVLPGAAVILALALIYAHFGQVPLVQAAFTGIKAA
HHHHHHHHCCCEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VIIIVLQALLKLSRKTLTGKGAWALAAGAFMSLYFLNIPYPLIIATAAAVGALTMAPATP
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
AASASHETATNPVLTLTLWGTLWGCPIVVLALMDHMFLMQIALFFSKLAVVSFGGAYAVL
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
AYMTQTVVAEHGWITTGQMMDALGLAETTPGPLILVTQFVAMIAGFNESGPLLALAAGAV
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
ALWVTFTPCFLWIFLAGPYLDAIATRPRLSGALSGITAAVVGVILNLAVWFSIHVLFGQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTLPGLPAPAPVPTSLDINALALTLLAAVVVLLLKRGIAETLGILAVAGLALTLL
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TAPTLIELCRVFARIGVLSFGGPAAQIALMHQTLVEEKKWLSEDSFLRALSLCMLLPGP
CCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
EAMQLATYAGWRLDGVRGGLVAGLLFVLPGAAVILALALIYAHFGQVPLVQAAFTGIKAA
HHHHHHHHCCCEECCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
VIIIVLQALLKLSRKTLTGKGAWALAAGAFMSLYFLNIPYPLIIATAAAVGALTMAPATP
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC
AASASHETATNPVLTLTLWGTLWGCPIVVLALMDHMFLMQIALFFSKLAVVSFGGAYAVL
CCCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
AYMTQTVVAEHGWITTGQMMDALGLAETTPGPLILVTQFVAMIAGFNESGPLLALAAGAV
HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHH
ALWVTFTPCFLWIFLAGPYLDAIATRPRLSGALSGITAAVVGVILNLAVWFSIHVLFGQV
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TTLPGLPAPAPVPTSLDINALALTLLAAVVVLLLKRGIAETLGILAVAGLALTLL
HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7536734 [H]