| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is fda [H]
Identifier: 110679535
GI number: 110679535
Start: 2172092
End: 2172964
Strand: Direct
Name: fda [H]
Synonym: RD1_2270
Alternate gene names: 110679535
Gene position: 2172092-2172964 (Clockwise)
Preceding gene: 110679534
Following gene: 110679539
Centisome position: 52.55
GC content: 57.39
Gene sequence:
>873_bases ATGCGTGAACAAATGAAATCAGGTGCGGGCTTTGTTGCCGCGCTGGATCAGTCTGGCGGGTCCACGCCAAAAGCGCTTAG CCTTTATGGCGTTGAGCCAACGGATTACGAGGGCGAAGAGGCGATGTTCAAAGCGATGCATGACATGCGCGCACGGATCA TTCTGGCGGATGACTTCACCAATGCCAAAATCATCGGCGCCATCCTGTTCGAACGTACGATGCATGATGAGATTGACGGC ACACCGGTCGCTGAACTGCTTTGGAACCGTCGGGGTGTTGTGCCGTTTCTGAAGATCGACAAAGGGCTGGAGGATGAGGC AAACGGCGTTCAGATGCTCAAGCCCATGCCGGGTCTTGAGGATGTCTTGGCCACGGCCAAGGGCAAAGGCGTGTTCGGGA CCAAGGAACGCTCTGTCATCAACCACGCAAACCCCGAAGGAATTGCGGCGATCGTCGCCCAGCAGTTTGATGTGGCAAGA ACCGTTCTGGCGGCGGGCCTTGTGCCGATCCTTGAGCCGGAAGTGAACATCCACTCGGAAACCAAGGCTGAAGCCGAAAC GCTGTTGGAGGCGGAGATCGCAAAGCATCTCGACACGCTGGACGAGGGCGTTGATGTGATGCTGAAACTGACCTTGCCGG ATCAACCGGGCCTTTATGACGGGCTTGCGCAACACCCGCGCGTGCTGCGGGTCGTTGCCTTGTCGGGCGGCTATTCGACG GATGTTGCCTCTGCCAAACTGGCGCAGAACGCGCATATGATCGCAAGCTTCAGCCGTGCGCTGACCGAAGGTTTGAACGT GAAGATGACGGATGCCGAATTCGGTGCCGCCCTGGGCAGCAACATCGACAAGATCTATCAGGCATCCATCTGA
Upstream 100 bases:
>100_bases ATGTCCGGCGCTAACATATATCATCTTTTGACAGCTTGATTTAAGGACGGGTGATCGTTCGGAATCATGAGAAGAGGTAA GAATGTCAGACTACAGTAAG
Downstream 100 bases:
>100_bases GCGCGCGCAAGCTGCGCTTTCAGGTCTTCCAGCACAAAGACCCGGATCGCGGAGGCCAGCCCTGTGCTGGTCCCGCGTTT CACATCAATGTCGGCGACCA
Product: fructose-1,6-bisphosphate aldolase
Products: NA
Alternate protein names: Fructose-biphosphate aldolase class I; FBP aldolase [H]
Number of amino acids: Translated: 290; Mature: 290
Protein sequence:
>290_residues MREQMKSGAGFVAALDQSGGSTPKALSLYGVEPTDYEGEEAMFKAMHDMRARIILADDFTNAKIIGAILFERTMHDEIDG TPVAELLWNRRGVVPFLKIDKGLEDEANGVQMLKPMPGLEDVLATAKGKGVFGTKERSVINHANPEGIAAIVAQQFDVAR TVLAAGLVPILEPEVNIHSETKAEAETLLEAEIAKHLDTLDEGVDVMLKLTLPDQPGLYDGLAQHPRVLRVVALSGGYST DVASAKLAQNAHMIASFSRALTEGLNVKMTDAEFGAALGSNIDKIYQASI
Sequences:
>Translated_290_residues MREQMKSGAGFVAALDQSGGSTPKALSLYGVEPTDYEGEEAMFKAMHDMRARIILADDFTNAKIIGAILFERTMHDEIDG TPVAELLWNRRGVVPFLKIDKGLEDEANGVQMLKPMPGLEDVLATAKGKGVFGTKERSVINHANPEGIAAIVAQQFDVAR TVLAAGLVPILEPEVNIHSETKAEAETLLEAEIAKHLDTLDEGVDVMLKLTLPDQPGLYDGLAQHPRVLRVVALSGGYST DVASAKLAQNAHMIASFSRALTEGLNVKMTDAEFGAALGSNIDKIYQASI >Mature_290_residues MREQMKSGAGFVAALDQSGGSTPKALSLYGVEPTDYEGEEAMFKAMHDMRARIILADDFTNAKIIGAILFERTMHDEIDG TPVAELLWNRRGVVPFLKIDKGLEDEANGVQMLKPMPGLEDVLATAKGKGVFGTKERSVINHANPEGIAAIVAQQFDVAR TVLAAGLVPILEPEVNIHSETKAEAETLLEAEIAKHLDTLDEGVDVMLKLTLPDQPGLYDGLAQHPRVLRVVALSGGYST DVASAKLAQNAHMIASFSRALTEGLNVKMTDAEFGAALGSNIDKIYQASI
Specific function: Unknown
COG id: COG3588
COG function: function code G; Fructose-1,6-bisphosphate aldolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class I fructose-bisphosphate aldolase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000741 - InterPro: IPR013785 - InterPro: IPR023014 [H]
Pfam domain/function: PF00274 Glycolytic [H]
EC number: =4.1.2.13 [H]
Molecular weight: Translated: 31124; Mature: 31124
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MREQMKSGAGFVAALDQSGGSTPKALSLYGVEPTDYEGEEAMFKAMHDMRARIILADDFT CCCCHHCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHEEEEEEECCC NAKIIGAILFERTMHDEIDGTPVAELLWNRRGVVPFLKIDKGLEDEANGVQMLKPMPGLE CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEECCCCCHH DVLATAKGKGVFGTKERSVINHANPEGIAAIVAQQFDVARTVLAAGLVPILEPEVNIHSE HHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCC TKAEAETLLEAEIAKHLDTLDEGVDVMLKLTLPDQPGLYDGLAQHPRVLRVVALSGGYST HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEEECCCCCC DVASAKLAQNAHMIASFSRALTEGLNVKMTDAEFGAALGSNIDKIYQASI HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCHHHHHHCCC >Mature Secondary Structure MREQMKSGAGFVAALDQSGGSTPKALSLYGVEPTDYEGEEAMFKAMHDMRARIILADDFT CCCCHHCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHEEEEEEECCC NAKIIGAILFERTMHDEIDGTPVAELLWNRRGVVPFLKIDKGLEDEANGVQMLKPMPGLE CHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCEEEECCCCCCCCCCCCEEECCCCCHH DVLATAKGKGVFGTKERSVINHANPEGIAAIVAQQFDVARTVLAAGLVPILEPEVNIHSE HHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCC TKAEAETLLEAEIAKHLDTLDEGVDVMLKLTLPDQPGLYDGLAQHPRVLRVVALSGGYST HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHCCCCEEEEEEECCCCCC DVASAKLAQNAHMIASFSRALTEGLNVKMTDAEFGAALGSNIDKIYQASI HHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]