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The map label for this gene is yagA [C]

Identifier: 110679515

GI number: 110679515

Start: 2151207

End: 2152064

Strand: Reverse

Name: yagA [C]

Synonym: RD1_2246

Alternate gene names: 110679515

Gene position: 2152064-2151207 (Counterclockwise)

Preceding gene: 110679516

Following gene: 110679507

Centisome position: 52.07

GC content: 56.41

Gene sequence:

>858_bases
ATGCGGGATCATGAAATCTCGCAGCGTCGGGCGTGCAGGCTCGTTGGTGTCGACCCTAAGACTGTCAGACGCGACCGTCC
GCCTGACAATCCCAAGATACGCAAAGAAATGAAGAAGATCGCCAATAAGCGGCGCAGGTTTGGCTATCGCCGGATCGGCA
TCATGCTTGAGCGCGAAGGATATGTGATGAACCACAAGAAGCTTTATCGCCTCTACACAGAAGAAAAACTGGGGGTCAGG
CGACGGCGGGGCCGCAAGCGGGCGCGTGGATCGCGAACACCGATGCCAGAAGCCCTGAGGCCGGGCGAAGGTTGGTCTTT
GGACTTTCTGTCTGACACGTTCGGTGCATCCCGTAGGTTCCGCATTCTGGCCATGAACGATGACTGCTGCCGCGAAAACC
TATGCCTTGTTGCAGACACGTCGATCTCTGGTGCCCGGGTGGCGCGCGAGTTGGATGCTTGGTTGCGTGTCTATGGAAAG
CCAAAGAGCATTGTCTCGGACAATGGCACCGAGTTCACCAGTCGGGCGATCCTAAAGTGGGCAAACGACAACAAGGTGGA
TTGGCACTACATCGATCCGAGCAAACCCCAACAGAACGCGTTCATCGAAAGCTTCAACGGCAGCCTACGGGACGAACTGC
TGAACGAGGAGATGTTCGACAGCCTGGACGATGCCCGGCGCAAGCTGGCCCTCTGGCGTTACGATTACAATAACATCAGG
CCACACTCATCGCTCGGGAACAAAACGCCTACAGAAGCGCGCCGGACGCTTGAGCAATTTGAGGGCTCCGCACCCGACGC
GCTTGCCCATACGGACAACGAAGAATATGAAAATCAGACCCGCAAACTCTCGTTATGA

Upstream 100 bases:

>100_bases
GCCTTCTTGCAGATCAGATGTTGGACAACGTGGTGCTGAAGGATTTGCTGGGAAAGAACTGACGACATCAGCTGAACGGC
GGGACGCCGCGCTCCGGGCG

Downstream 100 bases:

>100_bases
ATGAGGGAGCCTTGGGGGGCAGGTCAAAAACAAAGATGTATTTGCTGAACACCCGCGTCAGTTTTCTTTTGCCGCTCCCT
TTCGATATCCGCTTAGCCCC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MRDHEISQRRACRLVGVDPKTVRRDRPPDNPKIRKEMKKIANKRRRFGYRRIGIMLEREGYVMNHKKLYRLYTEEKLGVR
RRRGRKRARGSRTPMPEALRPGEGWSLDFLSDTFGASRRFRILAMNDDCCRENLCLVADTSISGARVARELDAWLRVYGK
PKSIVSDNGTEFTSRAILKWANDNKVDWHYIDPSKPQQNAFIESFNGSLRDELLNEEMFDSLDDARRKLALWRYDYNNIR
PHSSLGNKTPTEARRTLEQFEGSAPDALAHTDNEEYENQTRKLSL

Sequences:

>Translated_285_residues
MRDHEISQRRACRLVGVDPKTVRRDRPPDNPKIRKEMKKIANKRRRFGYRRIGIMLEREGYVMNHKKLYRLYTEEKLGVR
RRRGRKRARGSRTPMPEALRPGEGWSLDFLSDTFGASRRFRILAMNDDCCRENLCLVADTSISGARVARELDAWLRVYGK
PKSIVSDNGTEFTSRAILKWANDNKVDWHYIDPSKPQQNAFIESFNGSLRDELLNEEMFDSLDDARRKLALWRYDYNNIR
PHSSLGNKTPTEARRTLEQFEGSAPDALAHTDNEEYENQTRKLSL
>Mature_285_residues
MRDHEISQRRACRLVGVDPKTVRRDRPPDNPKIRKEMKKIANKRRRFGYRRIGIMLEREGYVMNHKKLYRLYTEEKLGVR
RRRGRKRARGSRTPMPEALRPGEGWSLDFLSDTFGASRRFRILAMNDDCCRENLCLVADTSISGARVARELDAWLRVYGK
PKSIVSDNGTEFTSRAILKWANDNKVDWHYIDPSKPQQNAFIESFNGSLRDELLNEEMFDSLDDARRKLALWRYDYNNIR
PHSSLGNKTPTEARRTLEQFEGSAPDALAHTDNEEYENQTRKLSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=275, Percent_Identity=24.7272727272727, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 33393; Mature: 33393

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDHEISQRRACRLVGVDPKTVRRDRPPDNPKIRKEMKKIANKRRRFGYRRIGIMLEREG
CCCCHHHHHHCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
YVMNHKKLYRLYTEEKLGVRRRRGRKRARGSRTPMPEALRPGEGWSLDFLSDTFGASRRF
CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEHHHHHHCCCCCEE
RILAMNDDCCRENLCLVADTSISGARVARELDAWLRVYGKPKSIVSDNGTEFTSRAILKW
EEEEECCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHEE
ANDNKVDWHYIDPSKPQQNAFIESFNGSLRDELLNEEMFDSLDDARRKLALWRYDYNNIR
CCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
PHSSLGNKTPTEARRTLEQFEGSAPDALAHTDNEEYENQTRKLSL
CCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MRDHEISQRRACRLVGVDPKTVRRDRPPDNPKIRKEMKKIANKRRRFGYRRIGIMLEREG
CCCCHHHHHHCCEEECCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHEEEEEECCC
YVMNHKKLYRLYTEEKLGVRRRRGRKRARGSRTPMPEALRPGEGWSLDFLSDTFGASRRF
CEECHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEHHHHHHCCCCCEE
RILAMNDDCCRENLCLVADTSISGARVARELDAWLRVYGKPKSIVSDNGTEFTSRAILKW
EEEEECCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHEE
ANDNKVDWHYIDPSKPQQNAFIESFNGSLRDELLNEEMFDSLDDARRKLALWRYDYNNIR
CCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
PHSSLGNKTPTEARRTLEQFEGSAPDALAHTDNEEYENQTRKLSL
CCCCCCCCCHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]