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The map label for this gene is intA [H]

Identifier: 110679498

GI number: 110679498

Start: 2130698

End: 2131927

Strand: Direct

Name: intA [H]

Synonym: RD1_2228

Alternate gene names: 110679498

Gene position: 2130698-2131927 (Clockwise)

Preceding gene: 110679490

Following gene: 110679499

Centisome position: 51.55

GC content: 56.1

Gene sequence:

>1230_bases
TTGGGGGTATCGGCAGAACACAAAAATCACGATACCCCCAAAATGCCTTTAAGCGACGCCAAGATTCGAAACCTCAAAGC
GCGCGACAAGCAATACAAAGTCGCTGATTTCGACAGCCTGTATGTGCTGGTCAAACCGAACGGCTCGAAGCTTTGGCAGA
TGAAGTACCGCTTGGATGGACGCGAAAAAACGCTCTCCATCGGCGCTTACCCGGCTGTGTCGTTGCAGCAAGCCAGAAAG
TCGCGGGATGCAGCCCGTTCGATGATTGCCAATGGTGAAGACCCTTCCGAAGAGAAGCAGGAACAAAAGAGACTGAAGCG
CGAGGCCAGTGGACAGACCTTCGAGAAAATTGGCGGCATGTTTCTTGATAAGCAGCGCAAGGAGGGAAAGTCCAAGGCTA
CGCTCGACAAGACCGCATATCATCTGAAGCTCGCGAACCACGACTTTGGCAAGAAGCCCATAACGGCGATAACTGCACCA
ATGATCCTGCGCACGCTGCGCAAGGTCGAAGCGAAGGGCAACTATGAGACGGCGCATCGCCTTCGGGCGCGGATCGGGTC
TGTGTTCCGTTATGCGGTTGCAAGTGGCCTCGCAGAAACCGATCCGACCTATGCTTTGCGCGATGCGCTCATCCGTCCGA
CCCGGCAGCATCGTGCTGCAATCACGGACCCAACAGCATTCGGCGCTTTGCTGCGCGAAATTGATGTCTTCGATGGCCAA
GTGACAACTCGCATCGCGCTTCAGCTTTTGGCCCTACTCGCCCAGCGCCCCGGAGAGTTGCGGCACGCCAAATGGAGCGA
GTTCGATGAGGCGGACAAAGTGTGGGCAATTCCGGCTGGCAAAATGAAAATGCGCCGCGATCACTTTGTACCTCTCGCAG
ATCAAGCGATTACGTTGCTGAACGAGCTTCGCCCTCTGACCGGCGAAAGCGAGTACCTTTTCCCTTCCCTTCGGTCATGG
CACCGGCCAATGAGCGAAAACACTATGAACGCGGCACTTCGGCGTATGGGATACTCCGGCGATGAAATGACCGCCCACGG
TTTCCGCGCCACGTTTTCCACGCTGGCCAATGAAAGCGGTCTCTGGAACCCAGACGCAATTGAACGAGCATTGGCGCATG
AAGAACGCAACGAAGTGCGCAGAGCCTATGCGCGCGGGGCACACTGGGAAGAGCGCGTGAAATTATCCGACTGGTGGGCT
GGAAGACTGGACGATTTCCGTTCAAGCTGA

Upstream 100 bases:

>100_bases
TGACATCCATTTAAGCCTTGTATATAAGAGCTTTTATGAGATTTATTGTCCAGCCACGTTTTCTGCCGTCCGATACAATA
CCCCCAGAAAAGGGGCAATA

Downstream 100 bases:

>100_bases
ACCGACTCATTTCGGGAGTAACAGCTTGAAGTTAAATGAATCGTCACGCGGATTAGCCTTTCAAAATCTATTGAAGCAAA
AGCTTGGATGGCTATTTGAA

Product: CP4-like integrase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 408

Protein sequence:

>409_residues
MGVSAEHKNHDTPKMPLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDGREKTLSIGAYPAVSLQQARK
SRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKATLDKTAYHLKLANHDFGKKPITAITAP
MILRTLRKVEAKGNYETAHRLRARIGSVFRYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQ
VTTRIALQLLALLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGESEYLFPSLRSW
HRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIERALAHEERNEVRRAYARGAHWEERVKLSDWWA
GRLDDFRSS

Sequences:

>Translated_409_residues
MGVSAEHKNHDTPKMPLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDGREKTLSIGAYPAVSLQQARK
SRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKATLDKTAYHLKLANHDFGKKPITAITAP
MILRTLRKVEAKGNYETAHRLRARIGSVFRYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQ
VTTRIALQLLALLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGESEYLFPSLRSW
HRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIERALAHEERNEVRRAYARGAHWEERVKLSDWWA
GRLDDFRSS
>Mature_408_residues
GVSAEHKNHDTPKMPLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDGREKTLSIGAYPAVSLQQARKS
RDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGMFLDKQRKEGKSKATLDKTAYHLKLANHDFGKKPITAITAPM
ILRTLRKVEAKGNYETAHRLRARIGSVFRYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQV
TTRIALQLLALLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLLNELRPLTGESEYLFPSLRSWH
RPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESGLWNPDAIERALAHEERNEVRRAYARGAHWEERVKLSDWWAG
RLDDFRSS

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1788974, Length=391, Percent_Identity=37.0843989769821, Blast_Score=241, Evalue=5e-65,
Organism=Escherichia coli, GI1788690, Length=395, Percent_Identity=32.9113924050633, Blast_Score=199, Evalue=4e-52,
Organism=Escherichia coli, GI145693166, Length=406, Percent_Identity=34.9753694581281, Blast_Score=198, Evalue=7e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 46485; Mature: 46354

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGVSAEHKNHDTPKMPLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDG
CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCEEEEECCCCCCEEEEEEEECC
REKTLSIGAYPAVSLQQARKSRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGM
CHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCH
FLDKQRKEGKSKATLDKTAYHLKLANHDFGKKPITAITAPMILRTLRKVEAKGNYETAHR
HHHHHHHCCCCHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
LRARIGSVFRYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCH
VTTRIALQLLALLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHCCCCHHHHHHHHH
NELRPLTGESEYLFPSLRSWHRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESG
HHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
LWNPDAIERALAHEERNEVRRAYARGAHWEERVKLSDWWAGRLDDFRSS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHCCHHHHHCCC
>Mature Secondary Structure 
GVSAEHKNHDTPKMPLSDAKIRNLKARDKQYKVADFDSLYVLVKPNGSKLWQMKYRLDG
CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEECCCCEEEEECCCCCCEEEEEEEECC
REKTLSIGAYPAVSLQQARKSRDAARSMIANGEDPSEEKQEQKRLKREASGQTFEKIGGM
CHHEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHCCH
FLDKQRKEGKSKATLDKTAYHLKLANHDFGKKPITAITAPMILRTLRKVEAKGNYETAHR
HHHHHHHCCCCHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
LRARIGSVFRYAVASGLAETDPTYALRDALIRPTRQHRAAITDPTAFGALLREIDVFDGQ
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHHCCCH
VTTRIALQLLALLAQRPGELRHAKWSEFDEADKVWAIPAGKMKMRRDHFVPLADQAITLL
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHCCCCHHHHHHHHH
NELRPLTGESEYLFPSLRSWHRPMSENTMNAALRRMGYSGDEMTAHGFRATFSTLANESG
HHHCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC
LWNPDAIERALAHEERNEVRRAYARGAHWEERVKLSDWWAGRLDDFRSS
CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7511583; 9278503; 9205837; 7524073 [H]