| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is braF [H]
Identifier: 110679437
GI number: 110679437
Start: 2061314
End: 2062054
Strand: Reverse
Name: braF [H]
Synonym: RD1_2163
Alternate gene names: 110679437
Gene position: 2062054-2061314 (Counterclockwise)
Preceding gene: 110679438
Following gene: 110679436
Centisome position: 49.89
GC content: 58.7
Gene sequence:
>741_bases ATGAGCACATTGCTCGAGGTTTCCGGCGTTTCGGTCTCATTTGACGGGTTCCGGGCGATCAACAATCTGACGTTCAAGAT CGGTGCGGCTGAGATGCGCGCGGTGATCGGGCCGAATGGCGCGGGCAAGACCACCTTCATGGACATCATAACCGGCAAGA CAAAACCTGACAGTGGCCACGTGCTTTGGGGCGAGAAATCCGTCTCATTGCTGGCCATGTCGGAAAGCAGGATCGCGCAG GAAGGCATCGGGCGCAAGTTTCAGCGCCCGACGGTTTTCGAGGACCAATCGGTCGCGGACAATCTGATGATGGCGTTGAA AAAACCCCGCAATCCTTTCGCTGTTTTACGCTTCAGACCGACGCGGCAAGACCATGAAAAAGTTGCGGATCTCGCCGATC AGATCGGTTTGTCCGCAGCGCTGCACCGCAAGTCGGGGGAGCTGTCGCACGGCCAAAAACAATGGCTTGAGATCGGCATG TTGCTCGCCCAGGACCCGCGGCTGCTGCTGGTGGATGAGCCCGCCGCCGGCATGACCCCTGCCGAGCGGGAGCATACCAC GGAACTGCTGGTGCAGGCCGCGAAAACCCGCGCCGTCGTTGTCGTTGAACATGACATGGAATTCGTGCGTCGGCTGAACT GCAAGGTCACGGTGCTGCATGAAGGGTCCGTTCTGGCCGAAGGGTCGCTGGATCACGTGACTTCGGATGAAAAAGTAATC GAGGTGTATCTTGGCCGCTGA
Upstream 100 bases:
>100_bases GCGGCCTGATCGATCTGATCTCAGACCGGCGCAGCCCCAAACGGCATGGGGCAGACCTTGGCCCGGATGCGGGTGCCCTG CAAGAAAGGGAGGCGGACAA
Downstream 100 bases:
>100_bases CCTGCTTCAAATCAACGATCTGACGCTGCATTATGGCGGCAGCCAGATCCTCAATGGTATTTCCATGTCGGCGGCCAAGG GCGAAGTCACCTGTGTGATG
Product: putative ABC transporter, ATP-binding component
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 246; Mature: 245
Protein sequence:
>246_residues MSTLLEVSGVSVSFDGFRAINNLTFKIGAAEMRAVIGPNGAGKTTFMDIITGKTKPDSGHVLWGEKSVSLLAMSESRIAQ EGIGRKFQRPTVFEDQSVADNLMMALKKPRNPFAVLRFRPTRQDHEKVADLADQIGLSAALHRKSGELSHGQKQWLEIGM LLAQDPRLLLVDEPAAGMTPAEREHTTELLVQAAKTRAVVVVEHDMEFVRRLNCKVTVLHEGSVLAEGSLDHVTSDEKVI EVYLGR
Sequences:
>Translated_246_residues MSTLLEVSGVSVSFDGFRAINNLTFKIGAAEMRAVIGPNGAGKTTFMDIITGKTKPDSGHVLWGEKSVSLLAMSESRIAQ EGIGRKFQRPTVFEDQSVADNLMMALKKPRNPFAVLRFRPTRQDHEKVADLADQIGLSAALHRKSGELSHGQKQWLEIGM LLAQDPRLLLVDEPAAGMTPAEREHTTELLVQAAKTRAVVVVEHDMEFVRRLNCKVTVLHEGSVLAEGSLDHVTSDEKVI EVYLGR >Mature_245_residues STLLEVSGVSVSFDGFRAINNLTFKIGAAEMRAVIGPNGAGKTTFMDIITGKTKPDSGHVLWGEKSVSLLAMSESRIAQE GIGRKFQRPTVFEDQSVADNLMMALKKPRNPFAVLRFRPTRQDHEKVADLADQIGLSAALHRKSGELSHGQKQWLEIGML LAQDPRLLLVDEPAAGMTPAEREHTTELLVQAAKTRAVVVVEHDMEFVRRLNCKVTVLHEGSVLAEGSLDHVTSDEKVIE VYLGR
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG4674
COG function: function code R; Uncharacterized ABC-type transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27881501, Length=219, Percent_Identity=28.310502283105, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI30795238, Length=219, Percent_Identity=28.310502283105, Blast_Score=88, Evalue=7e-18, Organism=Homo sapiens, GI31657092, Length=218, Percent_Identity=24.7706422018349, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI27262624, Length=230, Percent_Identity=26.5217391304348, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI27262626, Length=230, Percent_Identity=26.5217391304348, Blast_Score=82, Evalue=6e-16, Organism=Homo sapiens, GI105990541, Length=216, Percent_Identity=24.537037037037, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI21536376, Length=222, Percent_Identity=25.6756756756757, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI150417984, Length=216, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI116734710, Length=212, Percent_Identity=25.9433962264151, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI47078218, Length=216, Percent_Identity=24.537037037037, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI45446740, Length=216, Percent_Identity=24.537037037037, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI73747915, Length=209, Percent_Identity=26.7942583732057, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27477115, Length=182, Percent_Identity=28.021978021978, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI27436953, Length=211, Percent_Identity=24.1706161137441, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI255708477, Length=232, Percent_Identity=24.1379310344828, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI153792144, Length=212, Percent_Identity=25.4716981132075, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9955968, Length=214, Percent_Identity=25.2336448598131, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI9955966, Length=214, Percent_Identity=25.2336448598131, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI45243524, Length=214, Percent_Identity=25.2336448598131, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1789864, Length=258, Percent_Identity=30.6201550387597, Blast_Score=137, Evalue=5e-34, Organism=Escherichia coli, GI1788897, Length=239, Percent_Identity=30.5439330543933, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI1790525, Length=245, Percent_Identity=27.3469387755102, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1788472, Length=245, Percent_Identity=28.5714285714286, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1790190, Length=247, Percent_Identity=26.3157894736842, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1787792, Length=238, Percent_Identity=27.7310924369748, Blast_Score=97, Evalue=7e-22, Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=26.1224489795918, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1786398, Length=224, Percent_Identity=27.6785714285714, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788761, Length=233, Percent_Identity=29.1845493562232, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787029, Length=229, Percent_Identity=27.0742358078603, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI48995001, Length=223, Percent_Identity=29.5964125560538, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI87081834, Length=214, Percent_Identity=25.2336448598131, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790739, Length=245, Percent_Identity=26.530612244898, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1788225, Length=240, Percent_Identity=25.4166666666667, Blast_Score=85, Evalue=3e-18, Organism=Escherichia coli, GI1787370, Length=240, Percent_Identity=25.4166666666667, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87082268, Length=249, Percent_Identity=27.710843373494, Blast_Score=84, Evalue=9e-18, Organism=Escherichia coli, GI1786803, Length=236, Percent_Identity=26.6949152542373, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787500, Length=251, Percent_Identity=25.8964143426295, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87081791, Length=235, Percent_Identity=24.2553191489362, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786253, Length=217, Percent_Identity=28.110599078341, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI87081782, Length=237, Percent_Identity=25.3164556962025, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1786872, Length=240, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1790467, Length=226, Percent_Identity=28.3185840707965, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1789991, Length=254, Percent_Identity=24.0157480314961, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=229, Percent_Identity=26.6375545851528, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI48994943, Length=235, Percent_Identity=29.3617021276596, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1789586, Length=224, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1789032, Length=236, Percent_Identity=24.5762711864407, Blast_Score=77, Evalue=7e-16, Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=26.3636363636364, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786345, Length=247, Percent_Identity=24.2914979757085, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1790162, Length=250, Percent_Identity=24, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI1788210, Length=247, Percent_Identity=23.8866396761134, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786563, Length=221, Percent_Identity=25.7918552036199, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787712, Length=226, Percent_Identity=25.2212389380531, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788053, Length=211, Percent_Identity=27.4881516587678, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790544, Length=245, Percent_Identity=25.3061224489796, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1789672, Length=238, Percent_Identity=21.0084033613445, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87082267, Length=222, Percent_Identity=27.9279279279279, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081709, Length=229, Percent_Identity=24.8908296943231, Blast_Score=71, Evalue=5e-14, Organism=Escherichia coli, GI1787089, Length=228, Percent_Identity=22.8070175438596, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1789873, Length=210, Percent_Identity=24.2857142857143, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789891, Length=242, Percent_Identity=26.4462809917355, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1787759, Length=252, Percent_Identity=26.5873015873016, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787112, Length=212, Percent_Identity=25.9433962264151, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI2367384, Length=215, Percent_Identity=27.4418604651163, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1788644, Length=199, Percent_Identity=26.6331658291457, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI145693107, Length=215, Percent_Identity=23.2558139534884, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1787041, Length=250, Percent_Identity=25.6, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786654, Length=229, Percent_Identity=24.0174672489083, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1787164, Length=224, Percent_Identity=25.8928571428571, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789963, Length=242, Percent_Identity=24.3801652892562, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=25.0965250965251, Blast_Score=61, Evalue=7e-11, Organism=Escherichia coli, GI1787758, Length=248, Percent_Identity=21.7741935483871, Blast_Score=60, Evalue=9e-11, Organism=Caenorhabditis elegans, GI17543740, Length=218, Percent_Identity=26.605504587156, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI71983510, Length=228, Percent_Identity=26.7543859649123, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71983523, Length=228, Percent_Identity=26.7543859649123, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI71983516, Length=228, Percent_Identity=26.7543859649123, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115533608, Length=222, Percent_Identity=26.1261261261261, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI17565586, Length=212, Percent_Identity=26.8867924528302, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17510237, Length=227, Percent_Identity=27.7533039647577, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI212646699, Length=210, Percent_Identity=24.7619047619048, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17565938, Length=210, Percent_Identity=25.7142857142857, Blast_Score=71, Evalue=4e-13, Organism=Caenorhabditis elegans, GI17567265, Length=220, Percent_Identity=25.4545454545455, Blast_Score=70, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17541710, Length=219, Percent_Identity=23.7442922374429, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193202349, Length=226, Percent_Identity=22.1238938053097, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI25146777, Length=220, Percent_Identity=23.6363636363636, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17558664, Length=211, Percent_Identity=24.1706161137441, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI193211015, Length=227, Percent_Identity=23.3480176211454, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI71996809, Length=227, Percent_Identity=23.3480176211454, Blast_Score=64, Evalue=5e-11, Organism=Caenorhabditis elegans, GI193211017, Length=227, Percent_Identity=23.3480176211454, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI193209708, Length=225, Percent_Identity=23.1111111111111, Blast_Score=64, Evalue=8e-11, Organism=Drosophila melanogaster, GI24666092, Length=231, Percent_Identity=28.5714285714286, Blast_Score=92, Evalue=3e-19, Organism=Drosophila melanogaster, GI221512771, Length=226, Percent_Identity=24.3362831858407, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24648314, Length=230, Percent_Identity=23.4782608695652, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI28574150, Length=210, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=6e-14, Organism=Drosophila melanogaster, GI116007328, Length=210, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=7e-14, Organism=Drosophila melanogaster, GI24659289, Length=213, Percent_Identity=23.943661971831, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24643674, Length=214, Percent_Identity=25.2336448598131, Blast_Score=73, Evalue=1e-13, Organism=Drosophila melanogaster, GI17136662, Length=218, Percent_Identity=27.5229357798165, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI85726357, Length=220, Percent_Identity=25.9090909090909, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24650855, Length=233, Percent_Identity=25.3218884120172, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85724864, Length=183, Percent_Identity=28.9617486338798, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580555, Length=183, Percent_Identity=28.9617486338798, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24650853, Length=233, Percent_Identity=25.3218884120172, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85816269, Length=183, Percent_Identity=28.9617486338798, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24580553, Length=183, Percent_Identity=28.9617486338798, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24582014, Length=212, Percent_Identity=25, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24582012, Length=212, Percent_Identity=25, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI281362751, Length=232, Percent_Identity=25.8620689655172, Blast_Score=64, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 27024; Mature: 26893
Theoretical pI: Translated: 6.97; Mature: 6.97
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLLEVSGVSVSFDGFRAINNLTFKIGAAEMRAVIGPNGAGKTTFMDIITGKTKPDSGH CCCEEEECCCEEECCCHHHHCCEEEEECHHHHHEEECCCCCCCEEEEEEEECCCCCCCCC VLWGEKSVSLLAMSESRIAQEGIGRKFQRPTVFEDQSVADNLMMALKKPRNPFAVLRFRP EEECCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC TRQDHEKVADLADQIGLSAALHRKSGELSHGQKQWLEIGMLLAQDPRLLLVDEPAAGMTP CCHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCEEEEECCCCCCCC AEREHTTELLVQAAKTRAVVVVEHDMEFVRRLNCKVTVLHEGSVLAEGSLDHVTSDEKVI CCHHHHHHHHHHHHCCEEEEEEECCHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCEEE EVYLGR EEEECC >Mature Secondary Structure STLLEVSGVSVSFDGFRAINNLTFKIGAAEMRAVIGPNGAGKTTFMDIITGKTKPDSGH CCEEEECCCEEECCCHHHHCCEEEEECHHHHHEEECCCCCCCEEEEEEEECCCCCCCCC VLWGEKSVSLLAMSESRIAQEGIGRKFQRPTVFEDQSVADNLMMALKKPRNPFAVLRFRP EEECCCCEEEEEECHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEC TRQDHEKVADLADQIGLSAALHRKSGELSHGQKQWLEIGMLLAQDPRLLLVDEPAAGMTP CCHHHHHHHHHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHHEECCCCEEEEECCCCCCCC AEREHTTELLVQAAKTRAVVVVEHDMEFVRRLNCKVTVLHEGSVLAEGSLDHVTSDEKVI CCHHHHHHHHHHHHCCEEEEEEECCHHHHHHCCCEEEEEECCCEEECCCCCCCCCCCEEE EVYLGR EEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043 [H]