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The map label for this gene is glcD [H]

Identifier: 110679420

GI number: 110679420

Start: 2043182

End: 2044618

Strand: Direct

Name: glcD [H]

Synonym: RD1_2145

Alternate gene names: 110679420

Gene position: 2043182-2044618 (Clockwise)

Preceding gene: 110679419

Following gene: 110679421

Centisome position: 49.43

GC content: 63.6

Gene sequence:

>1437_bases
ATGCATAATTCAGCCGATTCCGCGTTTCGACAGACGCTTCTGGAGCAGTTGCCAGCCGAGGTGCTGCGCGACGCTGAATC
GCGCTACCGCGAGGAGCCGCGTGGCCGGTGGCAGGGCAAGGTGGGGGTGCTCGCGGCCCCGCGTTCCACCCAAGAGGTGG
CGCATCTGGTGCGGCTGGCCGCGGATGCGCGTGTGCCCATCCTCCCCTATGGCGGCGGTACGGGACTGGTGGGCGGTCAG
GTCATGCCGGAGGGTCCTGCGCCGCTCATGATCTCGTTGGAGCGGATGAACAGCATTCGCGCGGTTTATCCGCAGGAAAA
TGTTCTGATCTGTGACGCAGGCGCGATCCTTGCGGATGTCCAGCAGGCCGCTGCAGATGCGGGGCGGCTTTTCCCGCTGT
CGCTGGCAGCACAGGGCAGCGCGCGGATCGGCGGTAATCTGGCGACGAATGCCGGTGGCACCGGGGTCTTGCGCTATGGC
AACGCGCGGGACTTGTGTCTGGGGCTGGAGGCTGTTCTGCCCGACGGGCAAATCTGGCACGGGCTGAAACGGTTGCGCAA
GGACAACAGCGGCTATGACTTGCGGCATCTGCTGATCGGTTCCGAAGGGACGCTGGGGATCATCACGGCGGCTGCGTTGA
AGCTCAGCCCGCAACCGGCCCATATGGGCACGGCGGTCCTGGTCGTGTCATCGCCACAGGCCGCATTGTCGCTGCTCGCC
CTTGCGCGCGCGCAACTCGGGGAATTGGTCAGCGCCTTCGAGCTGATCAGCGGGCAGGGCCTGGCCTTTTTACGCGAAAC
GCTGCCCGATGTGCGCCAGCCCTTTGACACAGCCCCTGCGTGGTCTGTCCTGATCGAAGTGGGCCTTGTGCACGGGCTTG
ATCCGCAGAAGTCACTGGAAACACTCTTTGCCGCCGCCATGCAGGCGGGACTCGTCGAGGACGGCATCGTGGCCCAAAGC
CATCAACAAGCCGCTGAATTCTGGTCGGTGCGCGAGCATATTCCACAGGCGAACAAGCGCATCGGTTCCATCTCATCCCA
TGATATTTCGCTTCCCTTGGGGGTCTTGCCGGAATTCATTGAACGGGGGGACAAGCTGGTTCAGGCGTTGGGCGATTTCC
GCATCAATTGCTTCGGCCATGTGGGGGACGGCAACCTGCACTACAACGTGTTTCCGGCCAAGGGCCGCAGTGTTGCCGAT
CACGCCAACCAGCGCATGGAAGTGCAGCGTGTGGTCCATGACCTCGTGCATGCGTTCGGCGGCTCGGTCAGCGCGGAGCA
TGGGGTGGGGCGGTTGAAGGTGGACGATCTGGAACGTTATGGCGACCCGGCCAAACTGGCGGCGATGCGCGCGATCAAGG
CGGCGCTTGATCCGCTGGGGATCATGAACCCGGGCGCGGTTCTCAAAACAGTGCCGAGTGCGGTGCAACAGACATAA

Upstream 100 bases:

>100_bases
TGCCGTCACGCCCCACGGTGATGGTGCTGCGCCCTGCCTTCCTGAGCGAAAACTAGCGCGCCCTTGCATCCGGCGGCCCG
GCAAGGGATCAAGGCGCATG

Downstream 100 bases:

>100_bases
CATGTCCGTGGGTGCGGTTGTCTGTCGGCACATGCGTACTGATCTCATGCACAGGATCACCGTCATGAAAAGAGAGGTCA
GGTATGGCATTGACACGCAG

Product: oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MHNSADSAFRQTLLEQLPAEVLRDAESRYREEPRGRWQGKVGVLAAPRSTQEVAHLVRLAADARVPILPYGGGTGLVGGQ
VMPEGPAPLMISLERMNSIRAVYPQENVLICDAGAILADVQQAAADAGRLFPLSLAAQGSARIGGNLATNAGGTGVLRYG
NARDLCLGLEAVLPDGQIWHGLKRLRKDNSGYDLRHLLIGSEGTLGIITAAALKLSPQPAHMGTAVLVVSSPQAALSLLA
LARAQLGELVSAFELISGQGLAFLRETLPDVRQPFDTAPAWSVLIEVGLVHGLDPQKSLETLFAAAMQAGLVEDGIVAQS
HQQAAEFWSVREHIPQANKRIGSISSHDISLPLGVLPEFIERGDKLVQALGDFRINCFGHVGDGNLHYNVFPAKGRSVAD
HANQRMEVQRVVHDLVHAFGGSVSAEHGVGRLKVDDLERYGDPAKLAAMRAIKAALDPLGIMNPGAVLKTVPSAVQQT

Sequences:

>Translated_478_residues
MHNSADSAFRQTLLEQLPAEVLRDAESRYREEPRGRWQGKVGVLAAPRSTQEVAHLVRLAADARVPILPYGGGTGLVGGQ
VMPEGPAPLMISLERMNSIRAVYPQENVLICDAGAILADVQQAAADAGRLFPLSLAAQGSARIGGNLATNAGGTGVLRYG
NARDLCLGLEAVLPDGQIWHGLKRLRKDNSGYDLRHLLIGSEGTLGIITAAALKLSPQPAHMGTAVLVVSSPQAALSLLA
LARAQLGELVSAFELISGQGLAFLRETLPDVRQPFDTAPAWSVLIEVGLVHGLDPQKSLETLFAAAMQAGLVEDGIVAQS
HQQAAEFWSVREHIPQANKRIGSISSHDISLPLGVLPEFIERGDKLVQALGDFRINCFGHVGDGNLHYNVFPAKGRSVAD
HANQRMEVQRVVHDLVHAFGGSVSAEHGVGRLKVDDLERYGDPAKLAAMRAIKAALDPLGIMNPGAVLKTVPSAVQQT
>Mature_478_residues
MHNSADSAFRQTLLEQLPAEVLRDAESRYREEPRGRWQGKVGVLAAPRSTQEVAHLVRLAADARVPILPYGGGTGLVGGQ
VMPEGPAPLMISLERMNSIRAVYPQENVLICDAGAILADVQQAAADAGRLFPLSLAAQGSARIGGNLATNAGGTGVLRYG
NARDLCLGLEAVLPDGQIWHGLKRLRKDNSGYDLRHLLIGSEGTLGIITAAALKLSPQPAHMGTAVLVVSSPQAALSLLA
LARAQLGELVSAFELISGQGLAFLRETLPDVRQPFDTAPAWSVLIEVGLVHGLDPQKSLETLFAAAMQAGLVEDGIVAQS
HQQAAEFWSVREHIPQANKRIGSISSHDISLPLGVLPEFIERGDKLVQALGDFRINCFGHVGDGNLHYNVFPAKGRSVAD
HANQRMEVQRVVHDLVHAFGGSVSAEHGVGRLKVDDLERYGDPAKLAAMRAIKAALDPLGIMNPGAVLKTVPSAVQQT

Specific function: Unknown

COG id: COG0277

COG function: function code C; FAD/FMN-containing dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Homo sapiens, GI119964728, Length=465, Percent_Identity=35.9139784946237, Blast_Score=252, Evalue=6e-67,
Organism=Homo sapiens, GI37595756, Length=438, Percent_Identity=31.2785388127854, Blast_Score=157, Evalue=3e-38,
Organism=Homo sapiens, GI37595754, Length=485, Percent_Identity=29.6907216494845, Blast_Score=146, Evalue=5e-35,
Organism=Homo sapiens, GI4501993, Length=452, Percent_Identity=23.0088495575221, Blast_Score=95, Evalue=2e-19,
Organism=Escherichia coli, GI1789351, Length=471, Percent_Identity=28.2377919320594, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1787977, Length=505, Percent_Identity=26.7326732673267, Blast_Score=96, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI17534361, Length=451, Percent_Identity=32.5942350332594, Blast_Score=248, Evalue=7e-66,
Organism=Caenorhabditis elegans, GI71992373, Length=455, Percent_Identity=29.2307692307692, Blast_Score=140, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI71992381, Length=456, Percent_Identity=27.8508771929825, Blast_Score=128, Evalue=8e-30,
Organism=Caenorhabditis elegans, GI71992392, Length=378, Percent_Identity=30.1587301587302, Blast_Score=113, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI17556096, Length=487, Percent_Identity=21.1498973305955, Blast_Score=86, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6320023, Length=480, Percent_Identity=35.8333333333333, Blast_Score=292, Evalue=7e-80,
Organism=Saccharomyces cerevisiae, GI6320764, Length=486, Percent_Identity=29.6296296296296, Blast_Score=237, Evalue=3e-63,
Organism=Saccharomyces cerevisiae, GI6320027, Length=444, Percent_Identity=28.3783783783784, Blast_Score=154, Evalue=4e-38,
Organism=Drosophila melanogaster, GI18921117, Length=439, Percent_Identity=34.3963553530752, Blast_Score=244, Evalue=1e-64,
Organism=Drosophila melanogaster, GI24639277, Length=439, Percent_Identity=34.3963553530752, Blast_Score=244, Evalue=1e-64,
Organism=Drosophila melanogaster, GI24639275, Length=439, Percent_Identity=34.3963553530752, Blast_Score=244, Evalue=1e-64,
Organism=Drosophila melanogaster, GI24653753, Length=461, Percent_Identity=23.4273318872017, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR016164
- InterPro:   IPR016168
- InterPro:   IPR004113
- InterPro:   IPR004490
- InterPro:   IPR006094
- InterPro:   IPR016171 [H]

Pfam domain/function: PF02913 FAD-oxidase_C; PF01565 FAD_binding_4 [H]

EC number: NA

Molecular weight: Translated: 50787; Mature: 50787

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNSADSAFRQTLLEQLPAEVLRDAESRYREEPRGRWQGKVGVLAAPRSTQEVAHLVRLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH
ADARVPILPYGGGTGLVGGQVMPEGPAPLMISLERMNSIRAVYPQENVLICDAGAILADV
HCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEHHHHCCCEEECCCCCEEEEECCHHHHHH
QQAAADAGRLFPLSLAAQGSARIGGNLATNAGGTGVLRYGNARDLCLGLEAVLPDGQIWH
HHHHHCCCCEEEEEEECCCCCCCCCCEECCCCCCEEEEECCCCHHHHHHHHHCCCCHHHH
GLKRLRKDNSGYDLRHLLIGSEGTLGIITAAALKLSPQPAHMGTAVLVVSSPQAALSLLA
HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
LARAQLGELVSAFELISGQGLAFLRETLPDVRQPFDTAPAWSVLIEVGLVHGLDPQKSLE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
TLFAAAMQAGLVEDGIVAQSHQQAAEFWSVREHIPQANKRIGSISSHDISLPLGVLPEFI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHH
ERGDKLVQALGDFRINCFGHVGDGNLHYNVFPAKGRSVADHANQRMEVQRVVHDLVHAFG
HHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GSVSAEHGVGRLKVDDLERYGDPAKLAAMRAIKAALDPLGIMNPGAVLKTVPSAVQQT
CCCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MHNSADSAFRQTLLEQLPAEVLRDAESRYREEPRGRWQGKVGVLAAPRSTQEVAHLVRLA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHH
ADARVPILPYGGGTGLVGGQVMPEGPAPLMISLERMNSIRAVYPQENVLICDAGAILADV
HCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEHHHHCCCEEECCCCCEEEEECCHHHHHH
QQAAADAGRLFPLSLAAQGSARIGGNLATNAGGTGVLRYGNARDLCLGLEAVLPDGQIWH
HHHHHCCCCEEEEEEECCCCCCCCCCEECCCCCCEEEEECCCCHHHHHHHHHCCCCHHHH
GLKRLRKDNSGYDLRHLLIGSEGTLGIITAAALKLSPQPAHMGTAVLVVSSPQAALSLLA
HHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEEECCCHHHHHHHH
LARAQLGELVSAFELISGQGLAFLRETLPDVRQPFDTAPAWSVLIEVGLVHGLDPQKSLE
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHH
TLFAAAMQAGLVEDGIVAQSHQQAAEFWSVREHIPQANKRIGSISSHDISLPLGVLPEFI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCCHHHHHHHH
ERGDKLVQALGDFRINCFGHVGDGNLHYNVFPAKGRSVADHANQRMEVQRVVHDLVHAFG
HHHHHHHHHHHCCEEEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHC
GSVSAEHGVGRLKVDDLERYGDPAKLAAMRAIKAALDPLGIMNPGAVLKTVPSAVQQT
CCCCCCCCCCCEEHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969504; 9384377 [H]