Click here to switch to the map view.

The map label for this gene is 110679389

Identifier: 110679389

GI number: 110679389

Start: 2015078

End: 2015935

Strand: Reverse

Name: 110679389

Synonym: RD1_2111

Alternate gene names: NA

Gene position: 2015935-2015078 (Counterclockwise)

Preceding gene: 110679390

Following gene: 110679387

Centisome position: 48.78

GC content: 57.23

Gene sequence:

>858_bases
ATGCGCCACCCTTACGTTTTTCCCGCCTGCGTTGCGGGCGCGTTGCTTGTTGCAGGTTGTGCCCCAAAGCAGACAGATGA
AGAAACCGTCGAGCGCGCCTTTCAGGACGTGAACGTGGTTGATGAAACCAACCTGTCCGAAGTCATGCTGACGGTGACGG
ACCCGAATGAAGCGATTTCATATTACCAGCGGACATTGAAAAGCGATCCGGACAGGCTGGATTTGCGGCGCGGGCTTGCC
ACGTCTTTCGTGCGCGCCAAACGCTTTACCGAAGCAGCCAGCGCATGGGAGAAAGTCACAGAACTCAAAGACTCAACGCA
TGAAGACAGCGTGAATTACGCCGATGCGCTGATCCGCAGTGGCGATTGGGACACCGCCGAAAAGGTGCTGGATACCGTGC
CCCCGACCTATGAGACCTTCAAACGCTACCGCCTCGAAGCAATGATGGCAGACGCCAACAAAGAGTGGAGAAAAGCCGAC
AGTTTTTACGAAACAGCGATCGGGCTGACCACAACGCCAGCCGGTGCCTTCAACAACTGGGGTTATTCCAAACTGACCCG
TGGTGATTTTTCCGGCGCGGAGAAGCTGTTTGGCCAAGCGATCCGTCAGGACCCCACATTGTTCACAGCCAAAAACAACC
TTGTTCTGGCCCGAAGCGCACAGCGTAAATACACCCTGCCCGTGGTGCCGATGACACAATCCGAACGCGCGCAACTGCTG
CACACGATGGCGCTTTCGGCGGTCAGACAGGGGGACATTCAAACCAGCAAGAGCCTGCTGCGCGACGCGATTGACACGCA
CCCCCAACACTTTGACGCCGCCGTGCGTGCGCTGGAAGCCCTCGAAAGAAGCGGCTGA

Upstream 100 bases:

>100_bases
AGAAAAAAGCAGTGAATACAAATTGGTGCGACGCGGAAACAGCGATTTTGTGATCCGCCCGACGCCATAAACGAGGCCAG
AGCAGAAAAAGGACGCAAAA

Downstream 100 bases:

>100_bases
AGCGGCATGGCATTTTCATCAACGGCCGCACTGTGGTTCCTGCCCTTTGTGCTGCCGCTGTGCCTTTATGTCGCCTATAC
CGATCTGGCCCGGATGAAAA

Product: TPR domain-containing protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MRHPYVFPACVAGALLVAGCAPKQTDEETVERAFQDVNVVDETNLSEVMLTVTDPNEAISYYQRTLKSDPDRLDLRRGLA
TSFVRAKRFTEAASAWEKVTELKDSTHEDSVNYADALIRSGDWDTAEKVLDTVPPTYETFKRYRLEAMMADANKEWRKAD
SFYETAIGLTTTPAGAFNNWGYSKLTRGDFSGAEKLFGQAIRQDPTLFTAKNNLVLARSAQRKYTLPVVPMTQSERAQLL
HTMALSAVRQGDIQTSKSLLRDAIDTHPQHFDAAVRALEALERSG

Sequences:

>Translated_285_residues
MRHPYVFPACVAGALLVAGCAPKQTDEETVERAFQDVNVVDETNLSEVMLTVTDPNEAISYYQRTLKSDPDRLDLRRGLA
TSFVRAKRFTEAASAWEKVTELKDSTHEDSVNYADALIRSGDWDTAEKVLDTVPPTYETFKRYRLEAMMADANKEWRKAD
SFYETAIGLTTTPAGAFNNWGYSKLTRGDFSGAEKLFGQAIRQDPTLFTAKNNLVLARSAQRKYTLPVVPMTQSERAQLL
HTMALSAVRQGDIQTSKSLLRDAIDTHPQHFDAAVRALEALERSG
>Mature_285_residues
MRHPYVFPACVAGALLVAGCAPKQTDEETVERAFQDVNVVDETNLSEVMLTVTDPNEAISYYQRTLKSDPDRLDLRRGLA
TSFVRAKRFTEAASAWEKVTELKDSTHEDSVNYADALIRSGDWDTAEKVLDTVPPTYETFKRYRLEAMMADANKEWRKAD
SFYETAIGLTTTPAGAFNNWGYSKLTRGDFSGAEKLFGQAIRQDPTLFTAKNNLVLARSAQRKYTLPVVPMTQSERAQLL
HTMALSAVRQGDIQTSKSLLRDAIDTHPQHFDAAVRALEALERSG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31862; Mature: 31862

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHPYVFPACVAGALLVAGCAPKQTDEETVERAFQDVNVVDETNLSEVMLTVTDPNEAIS
CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHH
YYQRTLKSDPDRLDLRRGLATSFVRAKRFTEAASAWEKVTELKDSTHEDSVNYADALIRS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
GDWDTAEKVLDTVPPTYETFKRYRLEAMMADANKEWRKADSFYETAIGLTTTPAGAFNNW
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
GYSKLTRGDFSGAEKLFGQAIRQDPTLFTAKNNLVLARSAQRKYTLPVVPMTQSERAQLL
CCHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCEECCCCCCCCHHHHHHH
HTMALSAVRQGDIQTSKSLLRDAIDTHPQHFDAAVRALEALERSG
HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRHPYVFPACVAGALLVAGCAPKQTDEETVERAFQDVNVVDETNLSEVMLTVTDPNEAIS
CCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHH
YYQRTLKSDPDRLDLRRGLATSFVRAKRFTEAASAWEKVTELKDSTHEDSVNYADALIRS
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHC
GDWDTAEKVLDTVPPTYETFKRYRLEAMMADANKEWRKADSFYETAIGLTTTPAGAFNNW
CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCC
GYSKLTRGDFSGAEKLFGQAIRQDPTLFTAKNNLVLARSAQRKYTLPVVPMTQSERAQLL
CCHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCEECCCCCCCCHHHHHHH
HTMALSAVRQGDIQTSKSLLRDAIDTHPQHFDAAVRALEALERSG
HHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA