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The map label for this gene is yfbS [C]

Identifier: 110679298

GI number: 110679298

Start: 1923336

End: 1925108

Strand: Reverse

Name: yfbS [C]

Synonym: RD1_2016

Alternate gene names: 110679298

Gene position: 1925108-1923336 (Counterclockwise)

Preceding gene: 110679299

Following gene: 110679297

Centisome position: 46.58

GC content: 61.59

Gene sequence:

>1773_bases
ATGACAAACGAACAGATCATTCTCTTTTCCCTTTTTGCCGCCGTGTTTGCGATGCTGCTATGGGGGCGGTTGCGCTATGA
TATCGTTGCCTTTTCTGCCTTGCTGATTGGCGTGGTTCTGGGCGTTGTCCCCACCAAAGACGCGTTTTCGGGTTTTGGGC
ATCCGGCCACGCTGGTCGTTGCCCTTGTGCTGGTCGTCTCGGCGGGGTTGGTGCGTTCGGGCGCTGTTTTCCTGATCACG
CGCACGCTGGTGGATGCCTCGCGCAGTCTGGGTGCGCATATCGCGCTCATGGGGGCCATCGGCGGGGTTTTCTCCGCGTT
TATGAACAATGTCGCCGCCCTCGCCCTGTTGATGCCAGTCGATATCCAGACCGCGCGCAAGGCAGGGCGCGCCGCCGGGT
TGAGCCTGATGCCCCTGAGTTTTGCAACAATTCTTGGCGGCATGGTGACACTGATCGGCACCCCGCCCAACATCATCATT
GCCGCCATCCGCGAAGACAGTCTGGGCGCGCCCTTCGCGATGTTCGATTTCGCCCCGGTCGGCGGGGCGGCGGCCATCGC
GGGCCTTGCCTTTGTGTCCCTGATCGGGTGGCGCTTGATTCCGACCCGTGAGACAGACGCAGGCCAAAGCAATGATATTT
CAGAGTATATTGCCGAATTGACCGTGCCCGAGGGCAACAAGCAGATCGGCAAACGCGTCGCCGAATTGAGCGAGGCCGCA
GACAAGGCAGATGTTGCGATTATCGGCCTTGTCCGCGATGGCAAACGCCGGTACGGGCAGGCCCGCAACACTGTGCTTGA
AGCGGGTGATGCGCTGGTGCTGGAGGCAACGCCGGAAGCCCTCGATGAATTCCGCTCCAGCCTTGATCTGGCGGTCACGG
ACGCCAAGCGCGAAGAGGCGTTGCATGCAGCAGGCGAAGGTGTCGAGGTCATCGAAGTCGTGGTGCCTGAAGATGCGCGC
ATCCAAGGCAAGACCGCGCAGGCCATCGGGCTTGCATGGCGACAGCGCAGCGTGTTGCTGGGCGTGTCGCGGCGCGGCAA
ACGCCTGACCAAACGGTTGCGCCAAACGCCCATTCAGACCGGTGATATCCTGTTGATGCTGGTGCCGCGCGACACAGGCC
CGGATGTGGCGGACTGGCTTGGCTGCCTGCCTCTGGCCGACCGCGGGCTGGCGGTGACCGTCAACAAAAAAGTATGGCTG
GCCATAGGTTTGTTCGGGGCCGCGGTCTTGACGGCCAGCGTCGGGCTGTTGTATCTGCCCATCGCCATGGGCTTGGTGGT
GGTTGCCTATGTGCTGACAAAAATCATACCGCTTGCCGAGCTTTATGATCACATCAACTGGCCGGTCGTTGTGCTGCTCG
GCTCCATGATCCCGCTGGGTGCGGCACTTGAAAGCTCCGGCGGCACGGAACTGATCGCGACGGCGTTGGTCTCTTTGACC
GACGGGCTCCCGGCCTGGGCGGTTCTGACGGTGCTGATGATTGTCACGATGAGCCTGTCAGATGTCCTGAACAACACGGC
AACCACCATCGTCGCAGCCCCCGTGGGCATCCAGATGGCGCAAAGCCTTGGGGTATCCCCCGACCCCTTTCTGATGGCTG
TGGCCGTGGCCGCTTCCAGCGCCTTCCTGACGCCCATCGGGCACAAGAACAACACGCTGATCCTTGGCCCCGGGGGATAC
GGTTTTGGCGACTACTGGCGCATGGGCCTGCCGCTGGAGATCATAGTCGTCGCCGTCAGCATCCCAGCAATCCTCATTTT
CTGGCCTTTGTGA

Upstream 100 bases:

>100_bases
GCACAAGGGGCAAGGCAAGCTGTGTCAAAGCCGGCGCGCCAGTTTTCGCCGCACTTTCCCCCTTTCCCCGCAGCACCGCC
TATGCGTAGATCGGCGGATC

Downstream 100 bases:

>100_bases
GACGGCAGAAACAGGCAAAACAGCGCGCTGCCACGTTGTTGCTATGGGACGGCAGCGGCACCTGCTTTGATGCGTCTGTC
TCTTGCAGATGCGATCACTG

Product: TrkA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 590; Mature: 589

Protein sequence:

>590_residues
MTNEQIILFSLFAAVFAMLLWGRLRYDIVAFSALLIGVVLGVVPTKDAFSGFGHPATLVVALVLVVSAGLVRSGAVFLIT
RTLVDASRSLGAHIALMGAIGGVFSAFMNNVAALALLMPVDIQTARKAGRAAGLSLMPLSFATILGGMVTLIGTPPNIII
AAIREDSLGAPFAMFDFAPVGGAAAIAGLAFVSLIGWRLIPTRETDAGQSNDISEYIAELTVPEGNKQIGKRVAELSEAA
DKADVAIIGLVRDGKRRYGQARNTVLEAGDALVLEATPEALDEFRSSLDLAVTDAKREEALHAAGEGVEVIEVVVPEDAR
IQGKTAQAIGLAWRQRSVLLGVSRRGKRLTKRLRQTPIQTGDILLMLVPRDTGPDVADWLGCLPLADRGLAVTVNKKVWL
AIGLFGAAVLTASVGLLYLPIAMGLVVVAYVLTKIIPLAELYDHINWPVVVLLGSMIPLGAALESSGGTELIATALVSLT
DGLPAWAVLTVLMIVTMSLSDVLNNTATTIVAAPVGIQMAQSLGVSPDPFLMAVAVAASSAFLTPIGHKNNTLILGPGGY
GFGDYWRMGLPLEIIVVAVSIPAILIFWPL

Sequences:

>Translated_590_residues
MTNEQIILFSLFAAVFAMLLWGRLRYDIVAFSALLIGVVLGVVPTKDAFSGFGHPATLVVALVLVVSAGLVRSGAVFLIT
RTLVDASRSLGAHIALMGAIGGVFSAFMNNVAALALLMPVDIQTARKAGRAAGLSLMPLSFATILGGMVTLIGTPPNIII
AAIREDSLGAPFAMFDFAPVGGAAAIAGLAFVSLIGWRLIPTRETDAGQSNDISEYIAELTVPEGNKQIGKRVAELSEAA
DKADVAIIGLVRDGKRRYGQARNTVLEAGDALVLEATPEALDEFRSSLDLAVTDAKREEALHAAGEGVEVIEVVVPEDAR
IQGKTAQAIGLAWRQRSVLLGVSRRGKRLTKRLRQTPIQTGDILLMLVPRDTGPDVADWLGCLPLADRGLAVTVNKKVWL
AIGLFGAAVLTASVGLLYLPIAMGLVVVAYVLTKIIPLAELYDHINWPVVVLLGSMIPLGAALESSGGTELIATALVSLT
DGLPAWAVLTVLMIVTMSLSDVLNNTATTIVAAPVGIQMAQSLGVSPDPFLMAVAVAASSAFLTPIGHKNNTLILGPGGY
GFGDYWRMGLPLEIIVVAVSIPAILIFWPL
>Mature_589_residues
TNEQIILFSLFAAVFAMLLWGRLRYDIVAFSALLIGVVLGVVPTKDAFSGFGHPATLVVALVLVVSAGLVRSGAVFLITR
TLVDASRSLGAHIALMGAIGGVFSAFMNNVAALALLMPVDIQTARKAGRAAGLSLMPLSFATILGGMVTLIGTPPNIIIA
AIREDSLGAPFAMFDFAPVGGAAAIAGLAFVSLIGWRLIPTRETDAGQSNDISEYIAELTVPEGNKQIGKRVAELSEAAD
KADVAIIGLVRDGKRRYGQARNTVLEAGDALVLEATPEALDEFRSSLDLAVTDAKREEALHAAGEGVEVIEVVVPEDARI
QGKTAQAIGLAWRQRSVLLGVSRRGKRLTKRLRQTPIQTGDILLMLVPRDTGPDVADWLGCLPLADRGLAVTVNKKVWLA
IGLFGAAVLTASVGLLYLPIAMGLVVVAYVLTKIIPLAELYDHINWPVVVLLGSMIPLGAALESSGGTELIATALVSLTD
GLPAWAVLTVLMIVTMSLSDVLNNTATTIVAAPVGIQMAQSLGVSPDPFLMAVAVAASSAFLTPIGHKNNTLILGPGGYG
FGDYWRMGLPLEIIVVAVSIPAILIFWPL

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 RCK C-terminal domains [H]

Homologues:

Organism=Escherichia coli, GI1788629, Length=624, Percent_Identity=28.3653846153846, Blast_Score=201, Evalue=1e-52,
Organism=Caenorhabditis elegans, GI32565804, Length=135, Percent_Identity=31.1111111111111, Blast_Score=66, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71988385, Length=135, Percent_Identity=31.1111111111111, Blast_Score=66, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898
- InterPro:   IPR006037 [H]

Pfam domain/function: PF00939 Na_sulph_symp; PF02080 TrkA_C [H]

EC number: NA

Molecular weight: Translated: 61850; Mature: 61718

Theoretical pI: Translated: 5.51; Mature: 5.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNEQIILFSLFAAVFAMLLWGRLRYDIVAFSALLIGVVLGVVPTKDAFSGFGHPATLVV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHH
ALVLVVSAGLVRSGAVFLITRTLVDASRSLGAHIALMGAIGGVFSAFMNNVAALALLMPV
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DIQTARKAGRAAGLSLMPLSFATILGGMVTLIGTPPNIIIAAIREDSLGAPFAMFDFAPV
CHHHHHHCCHHCCCEEHHHHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCEEEHCCCCC
GGAAAIAGLAFVSLIGWRLIPTRETDAGQSNDISEYIAELTVPEGNKQIGKRVAELSEAA
CHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHC
DKADVAIIGLVRDGKRRYGQARNTVLEAGDALVLEATPEALDEFRSSLDLAVTDAKREEA
CCCCEEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEECHHHHHH
LHAAGEGVEVIEVVVPEDARIQGKTAQAIGLAWRQRSVLLGVSRRGKRLTKRLRQTPIQT
HHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHCCCCC
GDILLMLVPRDTGPDVADWLGCLPLADRGLAVTVNKKVWLAIGLFGAAVLTASVGLLYLP
CCEEEEEEECCCCCCHHHHHCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHH
IAMGLVVVAYVLTKIIPLAELYDHINWPVVVLLGSMIPLGAALESSGGTELIATALVSLT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHH
DGLPAWAVLTVLMIVTMSLSDVLNNTATTIVAAPVGIQMAQSLGVSPDPFLMAVAVAASS
CCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHHHHHHHCCCCCCHHHHHHHHHHCC
AFLTPIGHKNNTLILGPGGYGFGDYWRMGLPLEIIVVAVSIPAILIFWPL
HHCCCCCCCCCEEEECCCCCCCHHHHHCCCCHHHHHHHHHHCEEEEEECC
>Mature Secondary Structure 
TNEQIILFSLFAAVFAMLLWGRLRYDIVAFSALLIGVVLGVVPTKDAFSGFGHPATLVV
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCHHHHHH
ALVLVVSAGLVRSGAVFLITRTLVDASRSLGAHIALMGAIGGVFSAFMNNVAALALLMPV
HHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DIQTARKAGRAAGLSLMPLSFATILGGMVTLIGTPPNIIIAAIREDSLGAPFAMFDFAPV
CHHHHHHCCHHCCCEEHHHHHHHHHHHHHEEECCCCCEEEEEEECCCCCCCEEEHCCCCC
GGAAAIAGLAFVSLIGWRLIPTRETDAGQSNDISEYIAELTVPEGNKQIGKRVAELSEAA
CHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHC
DKADVAIIGLVRDGKRRYGQARNTVLEAGDALVLEATPEALDEFRSSLDLAVTDAKREEA
CCCCEEEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEECHHHHHH
LHAAGEGVEVIEVVVPEDARIQGKTAQAIGLAWRQRSVLLGVSRRGKRLTKRLRQTPIQT
HHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHEEEHHHCCHHHHHHHHHCCCCC
GDILLMLVPRDTGPDVADWLGCLPLADRGLAVTVNKKVWLAIGLFGAAVLTASVGLLYLP
CCEEEEEEECCCCCCHHHHHCCCCCCCCCEEEEECCCEEEHHHHHHHHHHHHHHHHHHHH
IAMGLVVVAYVLTKIIPLAELYDHINWPVVVLLGSMIPLGAALESSGGTELIATALVSLT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHHH
DGLPAWAVLTVLMIVTMSLSDVLNNTATTIVAAPVGIQMAQSLGVSPDPFLMAVAVAASS
CCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEECCCHHHHHHHCCCCCCHHHHHHHHHHCC
AFLTPIGHKNNTLILGPGGYGFGDYWRMGLPLEIIVVAVSIPAILIFWPL
HHCCCCCCCCCEEEECCCCCCCHHHHHCCCCHHHHHHHHHHCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]