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The map label for this gene is gatC

Identifier: 110679284

GI number: 110679284

Start: 1909657

End: 1909944

Strand: Reverse

Name: gatC

Synonym: RD1_2001

Alternate gene names: 110679284

Gene position: 1909944-1909657 (Counterclockwise)

Preceding gene: 110679285

Following gene: 110679283

Centisome position: 46.21

GC content: 59.38

Gene sequence:

>288_bases
ATGTCCATTGATGAAAGCACCGCCGCCCGCGTGGCGAAACTGGCCCGGATCAAGGTTGAACCAGCCGCATTGCCCGCGCT
GGCCGGAGAGTTCAACACCATTCTCGGCTTTATCGAACAGCTGAACGAGGTGGATATCGACGGCGTCGAGCCCATGACAT
CGGTGACACCGCAAGTGTTGAAACGCCGCGCGGATGTTGTTGCGGATGGGGATCAGCAGGCACGTGTCCTGTCCAATGCG
CCGGATGCGCGCGAAGGGTTCTTTGCCGTGCCGAAGGTGGTTGAATAA

Upstream 100 bases:

>100_bases
GACGAAAACAACCACCCTTCGCAGAGCGCTCAGCGCAGACGGAGACTTGGCAAGGGCGCGCATGCGCGGTACATGGCGGC
CAAGTAAATGAGGAACCCGC

Downstream 100 bases:

>100_bases
TGAGTAAGCTGAATGAATTGGGACTGGCCGAGGCGCGCGATGCCCTGCGCGCAGGTGAAACTACCTCGAAAGACCTGACC
GAGGCCTGCCTCACCGCCAT

Product: aspartyl/glutamyl-tRNA amidotransferase subunit C

Products: NA

Alternate protein names: Asp/Glu-ADT subunit C

Number of amino acids: Translated: 95; Mature: 94

Protein sequence:

>95_residues
MSIDESTAARVAKLARIKVEPAALPALAGEFNTILGFIEQLNEVDIDGVEPMTSVTPQVLKRRADVVADGDQQARVLSNA
PDAREGFFAVPKVVE

Sequences:

>Translated_95_residues
MSIDESTAARVAKLARIKVEPAALPALAGEFNTILGFIEQLNEVDIDGVEPMTSVTPQVLKRRADVVADGDQQARVLSNA
PDAREGFFAVPKVVE
>Mature_94_residues
SIDESTAARVAKLARIKVEPAALPALAGEFNTILGFIEQLNEVDIDGVEPMTSVTPQVLKRRADVVADGDQQARVLSNAP
DAREGFFAVPKVVE

Specific function: Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction take

COG id: COG0721

COG function: function code J; Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gatC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GATC_ROSDO (Q168I8)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_682291.1
- ProteinModelPortal:   Q168I8
- SMR:   Q168I8
- STRING:   Q168I8
- GeneID:   4196747
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_2001
- NMPDR:   fig|375451.6.peg.1869
- eggNOG:   COG0721
- HOGENOM:   HBG586403
- OMA:   APEREDH
- ProtClustDB:   PRK00034
- BioCyc:   RDEN375451:RD1_2001-MONOMER
- GO:   GO:0006412
- HAMAP:   MF_00122
- InterPro:   IPR003837
- TIGRFAMs:   TIGR00135

Pfam domain/function: PF02686 Glu-tRNAGln

EC number: 6.3.5.-

Molecular weight: Translated: 10176; Mature: 10044

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDESTAARVAKLARIKVEPAALPALAGEFNTILGFIEQLNEVDIDGVEPMTSVTPQVL
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHH
KRRADVVADGDQQARVLSNAPDAREGFFAVPKVVE
HHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SIDESTAARVAKLARIKVEPAALPALAGEFNTILGFIEQLNEVDIDGVEPMTSVTPQVL
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHH
KRRADVVADGDQQARVLSNAPDAREGFFAVPKVVE
HHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA