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The map label for this gene is ubiF [C]

Identifier: 110679245

GI number: 110679245

Start: 1870569

End: 1871768

Strand: Reverse

Name: ubiF [C]

Synonym: RD1_1958

Alternate gene names: 110679245

Gene position: 1871768-1870569 (Counterclockwise)

Preceding gene: 110679246

Following gene: 110679241

Centisome position: 45.29

GC content: 62.75

Gene sequence:

>1200_bases
ATGACAGATCAAACCTGTGATATTCTGATATCGGGCGGCGGTATTGCCGGGCTTACGGCTGCGGCCGCATTCGGGACCGC
CGGTTTTGACGTGATATGCGTTGACCCCGCGCCGCCAGTCACGGACCGCGCCGACCTCAAGGCGGATATGCGTTCCACCG
CCATGTTGCAGCCTGCGCGCGAGGTTCTTTCCGCTGCTGGCCTTTGGGATCGGCTTTCGCCCCATGCCTCCCCCTTGCAG
GTCATGCGCATCGTGGATGCTGGCGGGCCAGAGCCAGAAGCGCGCATGACGAAGGACTTCAACGCCTCGGATGTGTCGGA
TTTACCCTTTGGCTGGAACCTGCCCAATTGGCTGCTGCGCCGCGAAATGGTGGGGCGGCTGGACGAATTGCCGAACGTCG
ATTTCCGACCCGGCACAGGGACGAAATCCCTGTTCACGCGGGAAAACGAGGCCCGTGTCGGATTGACAGACGGCTCGCGC
GTGCGCGCAAAACTGGTGGTGGCCGCGGATGGGCGCGCCTCGCGCATGCGCGAAGCCGCAGGTATCCCGGTGCGCACAAC
CCGCTATGGGCAAAAAGCGCTGGCATTCGCCGTGACGCACCCGATCCCCCATGAAAACGTATCGACCGAAATACATCGCA
CGGGCGGCCCCTTCACCCTTGTGCCGCTCCCGGATCATGAGGGGATGCCGTCGTCAGCGGTGGTCTGGATGGATGACGGC
CCCGTCAGTCAACAGCGTTTACATAGCGATGTGGCGCGCTTCGAAGAAGAGATGTCAGAGCGCAGCTGCTATTTGTTTGG
ACCGCTGACGCTCGCCTCTCACCGCACAATCTGGCCCATCATCACGCAAAAAGCGGACCTCCTGTGCGGTGAGCGCCTCG
CGTTGATTGCCGAAGCGGCCCATGTTGTGCCGCCCATCGGGGCGCAGGGTCTGAACATGAGCCTCGCAGATACATCGACG
TTGCTGGCGCTCGCGCAGGAACGGCCGGAGGGTCTGGGTGATCGCAAGATGCTGGATGCCTATCACAAGGCACGTGACAA
TGATATTGCCCTGCGGGTGCGCGGTATCGACCTGCTGAACCGCGCCAGCCAAGTGCACACGCCCGCCCTCAGAGACGCGC
GTGCCATGGGATTGAATGCCCTGTATGCGCTCGGCCCTGTCCGGCGCACCCTGATGCAGATGGGGCTTGGCGTCAGATGA

Upstream 100 bases:

>100_bases
ATCATTTTCGTGACCTTGCTCTTTATCACCTGGGCCTGAGCTTGATGATGGTCATTCGGATTTGCTCTGGCTATTCTGCT
CGAAATGGAGCGGGAGTGCC

Downstream 100 bases:

>100_bases
CGTCGTCCAACACCCGCGCGAGGCGAGCAACGGTCCCATCGACATCATAAAGCTTGTCGAGCCCAAAGAGCCCCAGACGG
AATGTCCTGAAATCTGCCGG

Product: 2-octaprenyl-6-methoxyphenyl hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MTDQTCDILISGGGIAGLTAAAAFGTAGFDVICVDPAPPVTDRADLKADMRSTAMLQPAREVLSAAGLWDRLSPHASPLQ
VMRIVDAGGPEPEARMTKDFNASDVSDLPFGWNLPNWLLRREMVGRLDELPNVDFRPGTGTKSLFTRENEARVGLTDGSR
VRAKLVVAADGRASRMREAAGIPVRTTRYGQKALAFAVTHPIPHENVSTEIHRTGGPFTLVPLPDHEGMPSSAVVWMDDG
PVSQQRLHSDVARFEEEMSERSCYLFGPLTLASHRTIWPIITQKADLLCGERLALIAEAAHVVPPIGAQGLNMSLADTST
LLALAQERPEGLGDRKMLDAYHKARDNDIALRVRGIDLLNRASQVHTPALRDARAMGLNALYALGPVRRTLMQMGLGVR

Sequences:

>Translated_399_residues
MTDQTCDILISGGGIAGLTAAAAFGTAGFDVICVDPAPPVTDRADLKADMRSTAMLQPAREVLSAAGLWDRLSPHASPLQ
VMRIVDAGGPEPEARMTKDFNASDVSDLPFGWNLPNWLLRREMVGRLDELPNVDFRPGTGTKSLFTRENEARVGLTDGSR
VRAKLVVAADGRASRMREAAGIPVRTTRYGQKALAFAVTHPIPHENVSTEIHRTGGPFTLVPLPDHEGMPSSAVVWMDDG
PVSQQRLHSDVARFEEEMSERSCYLFGPLTLASHRTIWPIITQKADLLCGERLALIAEAAHVVPPIGAQGLNMSLADTST
LLALAQERPEGLGDRKMLDAYHKARDNDIALRVRGIDLLNRASQVHTPALRDARAMGLNALYALGPVRRTLMQMGLGVR
>Mature_398_residues
TDQTCDILISGGGIAGLTAAAAFGTAGFDVICVDPAPPVTDRADLKADMRSTAMLQPAREVLSAAGLWDRLSPHASPLQV
MRIVDAGGPEPEARMTKDFNASDVSDLPFGWNLPNWLLRREMVGRLDELPNVDFRPGTGTKSLFTRENEARVGLTDGSRV
RAKLVVAADGRASRMREAAGIPVRTTRYGQKALAFAVTHPIPHENVSTEIHRTGGPFTLVPLPDHEGMPSSAVVWMDDGP
VSQQRLHSDVARFEEEMSERSCYLFGPLTLASHRTIWPIITQKADLLCGERLALIAEAAHVVPPIGAQGLNMSLADTSTL
LALAQERPEGLGDRKMLDAYHKARDNDIALRVRGIDLLNRASQVHTPALRDARAMGLNALYALGPVRRTLMQMGLGVR

Specific function: Oxygenase That Introduces The Hydroxyl Group At Carbon Five Of 2-Octaprenyl-3-Methyl-6-Methoxy-1,4-Benzoquinol Resulting In The Formation Of 2-Octaprenyl-3-Methyl-5-Hydroxy-6-Methoxy-1,4- Benzoquinol. [C]

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiH/COQ6 family [H]

Homologues:

Organism=Escherichia coli, GI1786883, Length=404, Percent_Identity=26.7326732673267, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1789273, Length=400, Percent_Identity=24.75, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1789274, Length=402, Percent_Identity=24.8756218905473, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042
- InterPro:   IPR018168
- InterPro:   IPR010971 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: 1.14.13.-

Molecular weight: Translated: 43225; Mature: 43094

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDQTCDILISGGGIAGLTAAAAFGTAGFDVICVDPAPPVTDRADLKADMRSTAMLQPAR
CCCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
EVLSAAGLWDRLSPHASPLQVMRIVDAGGPEPEARMTKDFNASDVSDLPFGWNLPNWLLR
HHHHHHCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
REMVGRLDELPNVDFRPGTGTKSLFTRENEARVGLTDGSRVRAKLVVAADGRASRMREAA
HHHHHHHHHCCCCCCCCCCCCHHHEECCCCCEEECCCCCCEEEEEEEEECCCHHHHHHHC
GIPVRTTRYGQKALAFAVTHPIPHENVSTEIHRTGGPFTLVPLPDHEGMPSSAVVWMDDG
CCCEEECCCCCHHEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEEECCC
PVSQQRLHSDVARFEEEMSERSCYLFGPLTLASHRTIWPIITQKADLLCGERLALIAEAA
CCHHHHHHHHHHHHHHHHHHCCEEEEECEEECCCCEEEHHHHCHHHHHHHHHHHHHHHHH
HVVPPIGAQGLNMSLADTSTLLALAQERPEGLGDRKMLDAYHKARDNDIALRVRGIDLLN
HHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHH
RASQVHTPALRDARAMGLNALYALGPVRRTLMQMGLGVR
HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TDQTCDILISGGGIAGLTAAAAFGTAGFDVICVDPAPPVTDRADLKADMRSTAMLQPAR
CCCCEEEEEECCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
EVLSAAGLWDRLSPHASPLQVMRIVDAGGPEPEARMTKDFNASDVSDLPFGWNLPNWLLR
HHHHHHCHHHHCCCCCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHH
REMVGRLDELPNVDFRPGTGTKSLFTRENEARVGLTDGSRVRAKLVVAADGRASRMREAA
HHHHHHHHHCCCCCCCCCCCCHHHEECCCCCEEECCCCCCEEEEEEEEECCCHHHHHHHC
GIPVRTTRYGQKALAFAVTHPIPHENVSTEIHRTGGPFTLVPLPDHEGMPSSAVVWMDDG
CCCEEECCCCCHHEEEEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCEEEEECCC
PVSQQRLHSDVARFEEEMSERSCYLFGPLTLASHRTIWPIITQKADLLCGERLALIAEAA
CCHHHHHHHHHHHHHHHHHHCCEEEEECEEECCCCEEEHHHHCHHHHHHHHHHHHHHHHH
HVVPPIGAQGLNMSLADTSTLLALAQERPEGLGDRKMLDAYHKARDNDIALRVRGIDLLN
HHCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEEEECHHHHH
RASQVHTPALRDARAMGLNALYALGPVRRTLMQMGLGVR
HHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydroxylation [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]