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The map label for this gene is ftsY [H]

Identifier: 110679220

GI number: 110679220

Start: 1842164

End: 1843702

Strand: Direct

Name: ftsY [H]

Synonym: RD1_1932

Alternate gene names: 110679220

Gene position: 1842164-1843702 (Clockwise)

Preceding gene: 110679219

Following gene: 110679221

Centisome position: 44.57

GC content: 61.47

Gene sequence:

>1539_bases
ATGGCGTTTTTCAAAAAACTCAAAGACAAACTGTTCAAATCCTCATCAAGGATTGATGAGGGGTTGGAAGCCATCGTTGA
TGATGGCGGTGTGGAGGAAACGGTTGATGTTAAACCGGCCTCTGCTGCCGGGATGCATGAAACGCACGCGACGGCGCAGG
TCGCGGCCCCTGAAGCTGCGGATGCCGACGTTTTGGCCGAACCCTCTGATGCCTCCGCGCCGGAACCTGATCCCGCTGAG
CAAAAAACGGTTGATGAAAATACGGCGGATGTGCCCGTCAAAGCGCTTGACCCGCAGGAAGCGACCGTGGCCTTTTCGCC
AGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAG
AGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAG
CCAGAGCCAGAGCGCACGCCTGTCGCCCATGCGCCGCCAACACCCGAGGTGCCTGAGGTTGAGGTCGCACCGGCGCAACA
CAGCGCAGAGGATGATCCGTTTGAGCTGCCGCGCGCGACCGCGCCTATTGCCTCGGACCTTTCCGAACCGACCCCTGTCG
TGCGTGATAAACCGGGGTTGCTTGGTCGCCTGATGGGGCGGCAGGCGCCTGCCACCGTGGTGCGGCGCACGCTGGACGAT
GACATGCTGGAACAGCTCGAAGAGCTGTTGATTTCGGCCGATATGGGCGTGGACACCGCGCTGCGGGTCGTAGCGAACAT
GGCCGAAGGGCGGGTCGGGAAAAAACTCTCGGTTCAGGAAATCAAGGAGTTGCTGGCCTCCGAAATCGCGCAGATCATGG
AGCCTGTGGCGAAACCCTTGCCGCTTTACCCCCGAACACCGCAGGTTGTTCTGGTCGTGGGGGTGAACGGCTCCGGAAAG
ACAACCACCATCGGCAAACTGGCCAGCCAGTTTCGCGCGGCAGGCAAAAAGGTTGTCATCGCTGCGGGTGATACCTTTCG
CGCTGCCGCAGTTGAGCAATTGCAAGTCTGGGGGGATCGCGCGGGCGTGCCTGTGCTGACAGCGCCGGAAGGGTCCGACC
CGGCAAGTCTTGCCTTTGACGCCATGCTCAAGGCGCAGCGGGACGGCGCGGATCTGCTGCTGATCGACACGGCGGGCCGC
TTGCAGAACCGGACAGACCTGATGGAAGAACTGGCCAAGATCGTGCGCGTGATCCGCAAGAACGACGAAACGGCACCCCA
TAATACCTTGCTGGTGCTGGATGCGACGACGGGGCAGAACGCACTTAATCAGGTCAAGGTGTTCAGCGATATTTCGGATG
TCTCCGGCCTTGTGATGACCAAACTGGACGGGACTGCCAAGGGCGGCGTGCTCGTGGCACTGGCCGATAAATTCGGCCTG
CCGATCCATGCAATCGGTGTGGGCGAACAGATCGATGATCTTGACGCCTTCGACCCCGAGGATTTCGCCGACGCGCTCAT
GGGGCTTGAACGCGCGTGA

Upstream 100 bases:

>100_bases
CGGTGCGAGACCTGCTACCTGTGCGGCCCACCCTCGGGTCTTTTGTTTCCTGCCAAATCCTCTTAGATGATCATGAACCG
GTTTAGAGGCAGGCCCGCGC

Downstream 100 bases:

>100_bases
TCTTTCGCGCAGCCCGGTCGTGCAATTGCGCAGCGGGTGTGCGCCTTGCAGCGGATCGTAAAGCCACGGGATGACAGATT
GGCTGATCTCCATCGAAGGC

Product: signal recognition particle-docking protein FtsY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 512; Mature: 511

Protein sequence:

>512_residues
MAFFKKLKDKLFKSSSRIDEGLEAIVDDGGVEETVDVKPASAAGMHETHATAQVAAPEAADADVLAEPSDASAPEPDPAE
QKTVDENTADVPVKALDPQEATVAFSPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE
PEPERTPVAHAPPTPEVPEVEVAPAQHSAEDDPFELPRATAPIASDLSEPTPVVRDKPGLLGRLMGRQAPATVVRRTLDD
DMLEQLEELLISADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQIMEPVAKPLPLYPRTPQVVLVVGVNGSGK
TTTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMLKAQRDGADLLLIDTAGR
LQNRTDLMEELAKIVRVIRKNDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGVLVALADKFGL
PIHAIGVGEQIDDLDAFDPEDFADALMGLERA

Sequences:

>Translated_512_residues
MAFFKKLKDKLFKSSSRIDEGLEAIVDDGGVEETVDVKPASAAGMHETHATAQVAAPEAADADVLAEPSDASAPEPDPAE
QKTVDENTADVPVKALDPQEATVAFSPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPE
PEPERTPVAHAPPTPEVPEVEVAPAQHSAEDDPFELPRATAPIASDLSEPTPVVRDKPGLLGRLMGRQAPATVVRRTLDD
DMLEQLEELLISADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQIMEPVAKPLPLYPRTPQVVLVVGVNGSGK
TTTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMLKAQRDGADLLLIDTAGR
LQNRTDLMEELAKIVRVIRKNDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGVLVALADKFGL
PIHAIGVGEQIDDLDAFDPEDFADALMGLERA
>Mature_511_residues
AFFKKLKDKLFKSSSRIDEGLEAIVDDGGVEETVDVKPASAAGMHETHATAQVAAPEAADADVLAEPSDASAPEPDPAEQ
KTVDENTADVPVKALDPQEATVAFSPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEP
EPERTPVAHAPPTPEVPEVEVAPAQHSAEDDPFELPRATAPIASDLSEPTPVVRDKPGLLGRLMGRQAPATVVRRTLDDD
MLEQLEELLISADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQIMEPVAKPLPLYPRTPQVVLVVGVNGSGKT
TTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQLQVWGDRAGVPVLTAPEGSDPASLAFDAMLKAQRDGADLLLIDTAGRL
QNRTDLMEELAKIVRVIRKNDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGVLVALADKFGLP
IHAIGVGEQIDDLDAFDPEDFADALMGLERA

Specific function: Functional homolog of SRP receptor. Probably involved in the reception and insertion of a subset of proteins at the cytoplasmic membrane. Binds to the ribosome in the presence of the SRP particle and a non-hydrolyzable GTP analog. This abolishes trigger f

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI4507215, Length=290, Percent_Identity=30.3448275862069, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI226371618, Length=243, Percent_Identity=32.9218106995885, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI23308697, Length=340, Percent_Identity=29.4117647058824, Blast_Score=122, Evalue=7e-28,
Organism=Homo sapiens, GI295424842, Length=340, Percent_Identity=29.4117647058824, Blast_Score=122, Evalue=1e-27,
Organism=Homo sapiens, GI89061728, Length=137, Percent_Identity=34.3065693430657, Blast_Score=83, Evalue=7e-16,
Organism=Escherichia coli, GI1789874, Length=319, Percent_Identity=48.2758620689655, Blast_Score=287, Evalue=1e-78,
Organism=Escherichia coli, GI1788963, Length=275, Percent_Identity=32, Blast_Score=137, Evalue=1e-33,
Organism=Caenorhabditis elegans, GI17539958, Length=295, Percent_Identity=29.4915254237288, Blast_Score=139, Evalue=3e-33,
Organism=Caenorhabditis elegans, GI193206261, Length=283, Percent_Identity=31.8021201413428, Blast_Score=107, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6325345, Length=205, Percent_Identity=37.0731707317073, Blast_Score=149, Evalue=7e-37,
Organism=Drosophila melanogaster, GI17647949, Length=290, Percent_Identity=31.0344827586207, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24641198, Length=301, Percent_Identity=28.9036544850498, Blast_Score=104, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 54505; Mature: 54374

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFFKKLKDKLFKSSSRIDEGLEAIVDDGGVEETVDVKPASAAGMHETHATAQVAAPEAA
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHCHHHCCCCCCC
DADVLAEPSDASAPEPDPAEQKTVDENTADVPVKALDPQEATVAFSPEPEPEPEPEPEPE
CCCCEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCC
PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPERTPVAHAPPTPEVPEV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
EVAPAQHSAEDDPFELPRATAPIASDLSEPTPVVRDKPGLLGRLMGRQAPATVVRRTLDD
EECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCH
DMLEQLEELLISADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQIMEPVAKPL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PLYPRTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQLQVWGDR
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC
AGVPVLTAPEGSDPASLAFDAMLKAQRDGADLLLIDTAGRLQNRTDLMEELAKIVRVIRK
CCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHC
NDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGVLVALADKFGL
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCC
PIHAIGVGEQIDDLDAFDPEDFADALMGLERA
CEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure 
AFFKKLKDKLFKSSSRIDEGLEAIVDDGGVEETVDVKPASAAGMHETHATAQVAAPEAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCHHHHCHHHCCCCCCC
DADVLAEPSDASAPEPDPAEQKTVDENTADVPVKALDPQEATVAFSPEPEPEPEPEPEPE
CCCCEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCCCCC
PEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPERTPVAHAPPTPEVPEV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
EVAPAQHSAEDDPFELPRATAPIASDLSEPTPVVRDKPGLLGRLMGRQAPATVVRRTLDD
EECCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHCCCCHHHHHHHHCCH
DMLEQLEELLISADMGVDTALRVVANMAEGRVGKKLSVQEIKELLASEIAQIMEPVAKPL
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PLYPRTPQVVLVVGVNGSGKTTTIGKLASQFRAAGKKVVIAAGDTFRAAAVEQLQVWGDR
CCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHCC
AGVPVLTAPEGSDPASLAFDAMLKAQRDGADLLLIDTAGRLQNRTDLMEELAKIVRVIRK
CCCCEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHC
NDETAPHNTLLVLDATTGQNALNQVKVFSDISDVSGLVMTKLDGTAKGGVLVALADKFGL
CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCC
PIHAIGVGEQIDDLDAFDPEDFADALMGLERA
CEEEECCCCCCCCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3025556; 8041620; 9278503; 2161989; 8194520; 9002525 [H]