| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is gor [H]
Identifier: 110679208
GI number: 110679208
Start: 1831174
End: 1832628
Strand: Direct
Name: gor [H]
Synonym: RD1_1919
Alternate gene names: 110679208
Gene position: 1831174-1832628 (Clockwise)
Preceding gene: 110679207
Following gene: 110679209
Centisome position: 44.31
GC content: 59.45
Gene sequence:
>1455_bases ATGACTGACTTTGACTATGATCTTTTCGTAATCGGCGGCGGCTCTGGGGGCGTCAGGGCGGCGCGTGTTGCGGCCAGCGA AGCAGGCGCGAAGGTGGCTCTGGCGGAAGAAGACAGATACGGCGGCACCTGCGTGATCCGGGGCTGTGTGCCCAAAAAGC TGATGGTATTCGCCTCGGAATATGCGGGCATGCCGGATGAGGCGCAGGCCTATGGCTGGGACATGCAGAGAGGCGGCTTT GATTGGCCGGCTTTCAAAACCAAGCTGAACGCCGAACTGGACCGTCTTGAGCAGGTCTACCGCAGGCTGCTGTCGGAATC AGGTGTCGAGACCTTTGATGCACGCGCCACGGTGTCCGGCCAGCATGAGGTGACGCTGTCCGACGGGCAAACCAAATCGG CCAAACATATCCTCGTGGCAACCGGCGGCCACCCGGTCAGGCCCGACTTGCCCAATGCCCATCTTGGCATTGTGTCCGAT GACATTTTCCATCTGGAAAACCTGCCCAAATCGGTTCTGATCGTAGGCGGGGGTTACATCGCCTGCGAATTCGCCGGTAT TCTGAACGGGTTGGGGGTCAAGGTTACACAATACTATCGGGGGGCGCAGATTTTGCGTGGCTTTGATGACGAGGCGCGGG GCCTTGTGGCCGAACAGATGCGCGAGCGCGGCATTGATCTGAAAGTCGGCACCAACATTCTGGAGATGGCCCCGGCCAAG GAGCACGACAGCACGTCCGAAGGCGGTGCCATGGGCGGCACAGCGCAGGATCGCGCCGATCTTGCACAAATGCATGAAAG CGCTGCGACAAAAGGCCCGGTCTGGGTGAAATCCACCAGCGGCACCGAAGGAGTTTTTGACGTGGTCCTCTTCGCGACCG GGCGGGACCCGAACAGCAAAGACATGGGGCTTGAAGCGCAGGGCGTGAAACTGGGCCGGCGTGGCCAGATCGAGGTTGAC GCCTACAGTCAGACCGCCGTGCCCTCCATCTATGCGATCGGCGATGTCACCGACCGCGTCAACCTGACGCCGGTTGCGAT CCGCGAGGGCATGGCCTTTGTCGAAACCGTGTTCAAGGGCAATCCGACTGCCGTGGATCACGACCTGATCCCAAGCGCGA TTTTCACCCAGCCCGAGATGGGCACGGTCGGTCTGGGCGAAGAAGCGGCCCGCGAACAGGAACCGGTTGAAATTTATTGC ACTTCGTTTCGCCCCATGCGGACGGCTTTTGCCGAAAAACCGGACCGCGTGTTGATGAAACTTATTGTTTCCATAAAGAC GCGAAAGGTCCTTGGATGCCATATTGTGGCCCCGAATGCGGGTGAAATGATCCAACTGGCGGGTGTTGCAATCAAGATGG GCGCAACCAAGGAAGACTTTGACCGAACGGTTGCGGTCCACCCCACAATGTCGGAAGAGATCGTGACGATGCGTTCTCCC ATGCGCACGGCTTGA
Upstream 100 bases:
>100_bases ATTGATCGGAGCTATGCCTGTCTGACCGGTGTGACGCAGGAACAGGCAAACCTCTTGGCCCCGCTGCGGGTCAGCAGATT AATACAGAAAGGCCCTTCCC
Downstream 100 bases:
>100_bases ATTCCGGGCAGGGCAACGTACCTATGACTTGGTTTGATCGTGACGTTATGCGGTTTAGAAGGGAAAGAACTTAATGGCTG GCAACAATGGCGGCCCCTGG
Product: glutathione reductase
Products: NA
Alternate protein names: GR; GRase [H]
Number of amino acids: Translated: 484; Mature: 483
Protein sequence:
>484_residues MTDFDYDLFVIGGGSGGVRAARVAASEAGAKVALAEEDRYGGTCVIRGCVPKKLMVFASEYAGMPDEAQAYGWDMQRGGF DWPAFKTKLNAELDRLEQVYRRLLSESGVETFDARATVSGQHEVTLSDGQTKSAKHILVATGGHPVRPDLPNAHLGIVSD DIFHLENLPKSVLIVGGGYIACEFAGILNGLGVKVTQYYRGAQILRGFDDEARGLVAEQMRERGIDLKVGTNILEMAPAK EHDSTSEGGAMGGTAQDRADLAQMHESAATKGPVWVKSTSGTEGVFDVVLFATGRDPNSKDMGLEAQGVKLGRRGQIEVD AYSQTAVPSIYAIGDVTDRVNLTPVAIREGMAFVETVFKGNPTAVDHDLIPSAIFTQPEMGTVGLGEEAAREQEPVEIYC TSFRPMRTAFAEKPDRVLMKLIVSIKTRKVLGCHIVAPNAGEMIQLAGVAIKMGATKEDFDRTVAVHPTMSEEIVTMRSP MRTA
Sequences:
>Translated_484_residues MTDFDYDLFVIGGGSGGVRAARVAASEAGAKVALAEEDRYGGTCVIRGCVPKKLMVFASEYAGMPDEAQAYGWDMQRGGF DWPAFKTKLNAELDRLEQVYRRLLSESGVETFDARATVSGQHEVTLSDGQTKSAKHILVATGGHPVRPDLPNAHLGIVSD DIFHLENLPKSVLIVGGGYIACEFAGILNGLGVKVTQYYRGAQILRGFDDEARGLVAEQMRERGIDLKVGTNILEMAPAK EHDSTSEGGAMGGTAQDRADLAQMHESAATKGPVWVKSTSGTEGVFDVVLFATGRDPNSKDMGLEAQGVKLGRRGQIEVD AYSQTAVPSIYAIGDVTDRVNLTPVAIREGMAFVETVFKGNPTAVDHDLIPSAIFTQPEMGTVGLGEEAAREQEPVEIYC TSFRPMRTAFAEKPDRVLMKLIVSIKTRKVLGCHIVAPNAGEMIQLAGVAIKMGATKEDFDRTVAVHPTMSEEIVTMRSP MRTA >Mature_483_residues TDFDYDLFVIGGGSGGVRAARVAASEAGAKVALAEEDRYGGTCVIRGCVPKKLMVFASEYAGMPDEAQAYGWDMQRGGFD WPAFKTKLNAELDRLEQVYRRLLSESGVETFDARATVSGQHEVTLSDGQTKSAKHILVATGGHPVRPDLPNAHLGIVSDD IFHLENLPKSVLIVGGGYIACEFAGILNGLGVKVTQYYRGAQILRGFDDEARGLVAEQMRERGIDLKVGTNILEMAPAKE HDSTSEGGAMGGTAQDRADLAQMHESAATKGPVWVKSTSGTEGVFDVVLFATGRDPNSKDMGLEAQGVKLGRRGQIEVDA YSQTAVPSIYAIGDVTDRVNLTPVAIREGMAFVETVFKGNPTAVDHDLIPSAIFTQPEMGTVGLGEEAAREQEPVEIYCT SFRPMRTAFAEKPDRVLMKLIVSIKTRKVLGCHIVAPNAGEMIQLAGVAIKMGATKEDFDRTVAVHPTMSEEIVTMRSPM RTA
Specific function: Maintains High Levels Of Reduced Glutathione In The Cytosol. [C]
COG id: COG1249
COG function: function code C; Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI50301238, Length=482, Percent_Identity=38.5892116182573, Blast_Score=295, Evalue=5e-80, Organism=Homo sapiens, GI22035672, Length=459, Percent_Identity=36.1655773420479, Blast_Score=240, Evalue=3e-63, Organism=Homo sapiens, GI148277065, Length=457, Percent_Identity=33.4792122538293, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI33519430, Length=457, Percent_Identity=33.4792122538293, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI33519428, Length=457, Percent_Identity=33.4792122538293, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI33519426, Length=457, Percent_Identity=33.4792122538293, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI148277071, Length=457, Percent_Identity=33.4792122538293, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI291045266, Length=453, Percent_Identity=32.4503311258278, Blast_Score=216, Evalue=3e-56, Organism=Homo sapiens, GI291045268, Length=450, Percent_Identity=30, Blast_Score=179, Evalue=4e-45, Organism=Homo sapiens, GI91199540, Length=487, Percent_Identity=29.3634496919918, Blast_Score=171, Evalue=1e-42, Organism=Escherichia coli, GI1789915, Length=465, Percent_Identity=37.8494623655914, Blast_Score=277, Evalue=1e-75, Organism=Escherichia coli, GI87082354, Length=485, Percent_Identity=27.8350515463918, Blast_Score=141, Evalue=8e-35, Organism=Escherichia coli, GI1786307, Length=481, Percent_Identity=25.3638253638254, Blast_Score=129, Evalue=4e-31, Organism=Escherichia coli, GI87081717, Length=484, Percent_Identity=24.5867768595041, Blast_Score=117, Evalue=2e-27, Organism=Caenorhabditis elegans, GI71983419, Length=458, Percent_Identity=36.0262008733624, Blast_Score=252, Evalue=3e-67, Organism=Caenorhabditis elegans, GI71983429, Length=462, Percent_Identity=35.7142857142857, Blast_Score=252, Evalue=3e-67, Organism=Caenorhabditis elegans, GI17557007, Length=504, Percent_Identity=31.7460317460317, Blast_Score=240, Evalue=1e-63, Organism=Caenorhabditis elegans, GI71982272, Length=500, Percent_Identity=31.8, Blast_Score=215, Evalue=3e-56, Organism=Caenorhabditis elegans, GI32565766, Length=479, Percent_Identity=29.4363256784969, Blast_Score=166, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6325166, Length=490, Percent_Identity=37.9591836734694, Blast_Score=280, Evalue=5e-76, Organism=Saccharomyces cerevisiae, GI6321091, Length=485, Percent_Identity=28.2474226804124, Blast_Score=148, Evalue=2e-36, Organism=Saccharomyces cerevisiae, GI6325240, Length=495, Percent_Identity=26.4646464646465, Blast_Score=132, Evalue=9e-32, Organism=Drosophila melanogaster, GI17737741, Length=503, Percent_Identity=33.9960238568588, Blast_Score=231, Evalue=9e-61, Organism=Drosophila melanogaster, GI24640551, Length=501, Percent_Identity=33.1337325349301, Blast_Score=221, Evalue=1e-57, Organism=Drosophila melanogaster, GI24640549, Length=501, Percent_Identity=33.1337325349301, Blast_Score=220, Evalue=1e-57, Organism=Drosophila melanogaster, GI24640553, Length=501, Percent_Identity=33.1337325349301, Blast_Score=220, Evalue=2e-57, Organism=Drosophila melanogaster, GI21358499, Length=486, Percent_Identity=28.8065843621399, Blast_Score=168, Evalue=7e-42,
Paralogues:
None
Copy number: 650 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR006324 - InterPro: IPR004099 - InterPro: IPR012999 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.7 [H]
Molecular weight: Translated: 52059; Mature: 51928
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS00076 PYRIDINE_REDOX_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDFDYDLFVIGGGSGGVRAARVAASEAGAKVALAEEDRYGGTCVIRGCVPKKLMVFASE CCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHH YAGMPDEAQAYGWDMQRGGFDWPAFKTKLNAELDRLEQVYRRLLSESGVETFDARATVSG HCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEECC QHEVTLSDGQTKSAKHILVATGGHPVRPDLPNAHLGIVSDDIFHLENLPKSVLIVGGGYI CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHHHCCCCEEEEEECCEE ACEFAGILNGLGVKVTQYYRGAQILRGFDDEARGLVAEQMRERGIDLKVGTNILEMAPAK EEEHHHHHCCCCEEEEHHHCCHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCC EHDSTSEGGAMGGTAQDRADLAQMHESAATKGPVWVKSTSGTEGVFDVVLFATGRDPNSK CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCC DMGLEAQGVKLGRRGQIEVDAYSQTAVPSIYAIGDVTDRVNLTPVAIREGMAFVETVFKG CCCCEECCCEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC NPTAVDHDLIPSAIFTQPEMGTVGLGEEAAREQEPVEIYCTSFRPMRTAFAEKPDRVLMK CCCEECCCCCCHHHCCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHCCHHHHHHH LIVSIKTRKVLGCHIVAPNAGEMIQLAGVAIKMGATKEDFDRTVAVHPTMSEEIVTMRSP HHHHHHCCEEEEEEEECCCCCCEEEEECEEEEECCCHHHHCCEEEECCCCCHHHHHHCCC MRTA CCCC >Mature Secondary Structure TDFDYDLFVIGGGSGGVRAARVAASEAGAKVALAEEDRYGGTCVIRGCVPKKLMVFASE CCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCEEEEECCCCHHHHHHHHH YAGMPDEAQAYGWDMQRGGFDWPAFKTKLNAELDRLEQVYRRLLSESGVETFDARATVSG HCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCEEEECC QHEVTLSDGQTKSAKHILVATGGHPVRPDLPNAHLGIVSDDIFHLENLPKSVLIVGGGYI CEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCHHHHHCCCCEEEEEECCEE ACEFAGILNGLGVKVTQYYRGAQILRGFDDEARGLVAEQMRERGIDLKVGTNILEMAPAK EEEHHHHHCCCCEEEEHHHCCHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHCCCC EHDSTSEGGAMGGTAQDRADLAQMHESAATKGPVWVKSTSGTEGVFDVVLFATGRDPNSK CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEEEEEEECCCCCCC DMGLEAQGVKLGRRGQIEVDAYSQTAVPSIYAIGDVTDRVNLTPVAIREGMAFVETVFKG CCCCEECCCEECCCCEEEEECCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHCC NPTAVDHDLIPSAIFTQPEMGTVGLGEEAAREQEPVEIYCTSFRPMRTAFAEKPDRVLMK CCCEECCCCCCHHHCCCCCCCCCCCCHHHHCCCCCEEEEEECCCHHHHHHHCCHHHHHHH LIVSIKTRKVLGCHIVAPNAGEMIQLAGVAIKMGATKEDFDRTVAVHPTMSEEIVTMRSP HHHHHHCCEEEEEEEECCCCCCEEEEECEEEEECCCHHHHCCEEEECCCCCHHHHHHCCC MRTA CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7538273 [H]